{"id":"W2208291422","doi":"10.1094/phyto-09-15-0211-r","title":"Genome Sequence Analysis of New Isolates of the Winona Strain of <i>Plum pox virus</i> and the First Definitive Evidence of Intrastrain Recombination Events","year":2015,"lang":"en","type":"article","venue":"Phytopathology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Russian Foundation for Basic Research; Australian Government; Agriculture and Agri-Food Canada; Government of Canada; Canadian Food Inspection Agency","keywords":"Biology; Recombination; Strain (injury); Genetic diversity; GenBank; Genetics; Genome; Recombinant DNA; Potato virus Y; Virology; Virus; Gene; Plant virus; Population","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009446999,0.00008337788,0.0003766225,0.0000296473,0.00004756139,0.000002854218,0.0003202621,0.00004608765,0.00001432729],"category_scores_gemma":[0.000783834,0.00002780343,0.0001025234,0.0006494299,0.0006572842,0.00007224621,0.0001729215,0.00008446252,4.239571e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001231858,"about_ca_system_score_gemma":0.00002763768,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007682825,"about_ca_topic_score_gemma":0.00164258,"domain_scores_codex":[0.9988909,0.00029849,0.0003148533,0.0001565161,0.000198359,0.0001409338],"domain_scores_gemma":[0.9985049,0.0008523708,0.0003422544,0.00007802247,0.0001893321,0.00003305759],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001798012,0.0000580886,0.03096068,0.00002378694,0.0001094036,8.07987e-7,0.001397584,0.00004007746,0.9648001,0.0004264938,0.0000141422,0.001989058],"study_design_scores_gemma":[0.0002607181,0.0003360173,0.9809251,0.00006037263,0.0001383,0.000004905912,0.0004716874,0.0001066092,0.01234022,0.005251152,0.00004600529,0.00005890503],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967555,0.0009602657,0.000006791942,0.001345536,0.00003060774,0.000184925,0.0006364271,0.000002943425,0.00007704249],"genre_scores_gemma":[0.9992734,0.0006032549,0.00003696056,0.00004389029,0.00001190479,0.000005815878,0.000007522018,4.611055e-7,0.00001674187],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9524599,"threshold_uncertainty_score":0.2421791,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09131001317981884,"score_gpt":0.2938034712277938,"score_spread":0.2024934580479749,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}