{"id":"W2208291422","doi":"10.1094/phyto-09-15-0211-r","title":"Genome Sequence Analysis of New Isolates of the Winona Strain of <i>Plum pox virus</i> and the First Definitive Evidence of Intrastrain Recombination Events","year":2015,"lang":"en","type":"article","venue":"Phytopathology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Russian Foundation for Basic Research; Australian Government; Agriculture and Agri-Food Canada; Government of Canada; Canadian Food Inspection Agency","keywords":"Biology; Recombination; Strain (injury); Genetic diversity; GenBank; Genetics; Genome; Recombinant DNA; Potato virus Y; Virology; Virus; Gene; Plant virus; Population","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001820504,0.0003797372,0.0003262852,0.0004468166,0.0002813012,0.0004783371,0.0002778426,0.0004315768,0.0004308624],"category_scores_gemma":[0.0004085976,0.0001653777,0.0005401367,0.0005056508,0.0001708365,0.000243997,0.000314854,0.0005806581,0.0001750831],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002774966,"about_ca_system_score_gemma":0.0002633437,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002215263,"about_ca_topic_score_gemma":0.003827031,"domain_scores_codex":[0.9997384,0.00002605064,0.00002744578,0.00008135087,0.00008566674,0.00004108313],"domain_scores_gemma":[0.9996713,0.00007447503,0.00009933485,0.00003486875,0.00005563498,0.00006426342],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002426292,0.0001035348,0.01868481,0.00009023175,0.00004149847,0.00072224,0.0003217025,0.0001212386,0.9734196,0.00005641747,0.00006408599,0.006131913],"study_design_scores_gemma":[0.00004726805,0.001548586,0.8252215,0.00004421706,0.0001897958,0.005659903,0.001133493,0.001680538,0.1551722,0.00009354025,0.009163034,0.00004600356],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985689,0.0001579036,0.000519661,0.00001178917,0.000006548133,0.0000372278,0.0003725732,0.000006302938,0.0003191947],"genre_scores_gemma":[0.9824964,0.0003116179,0.006007898,0.00008295823,0.000009718155,0.00006405058,0.009960424,0.00002033115,0.001046737],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002215263,"threshold_uncertainty_score":0.004404724,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09131001317981884,"score_gpt":0.2938034712277938,"score_spread":0.2024934580479749,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}