{"id":"W2216089216","doi":"10.1128/jcm.02720-15","title":"Laboratory-Acquired Infection with Salmonella enterica Serovar Typhimurium Exposed by Whole-Genome Sequencing","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"Saskatchewan Disease Control Laboratory; Public Health Agency of Canada; University of Regina","funders":"","keywords":"Salmonella enterica; Serotype; Biosafety; Salmonella; Biology; DNA sequencing; Whole genome sequencing; Genome; Identification (biology); Computational biology; Virology; Genetics; DNA; Gene; Biotechnology; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006332183,0.0003662973,0.0002214373,0.0005212869,0.0001883893,0.0004648412,0.0002084144,0.0004146982,0.0007496343],"category_scores_gemma":[0.001000458,0.0001654932,0.000342956,0.000356638,0.0002202642,0.0002392517,0.0004576085,0.0003520702,0.0001602676],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001516197,"about_ca_system_score_gemma":0.0002349935,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002009272,"about_ca_topic_score_gemma":0.003255776,"domain_scores_codex":[0.9994534,0.0001612129,0.00004623203,0.0001442667,0.0001256298,0.00006939932],"domain_scores_gemma":[0.9994926,0.0001538453,0.0001302061,0.00006300462,0.0001108473,0.0000494197],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"case_report","study_design_scores_codex":[0.0006081677,0.0001650198,0.3746746,0.0003935203,0.0002815108,0.0009365687,0.0005267338,0.0006040976,0.5915765,0.000343429,0.0006886348,0.02920121],"study_design_scores_gemma":[0.00001806011,0.000947123,0.8903565,0.0001135172,0.0002840927,0.004257244,0.0008266498,0.00438254,0.09400976,0.0006240243,0.004139813,0.00004065234],"study_design_candidate":"case_report","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9855928,0.0007753032,0.009780598,0.0001894236,0.00004153861,0.00007124146,0.001730614,0.000106613,0.001711735],"genre_scores_gemma":[0.9881854,0.0006385922,0.008780163,0.0002387385,0.00001619187,0.00001861552,0.001652345,0.00002018297,0.0004497904],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002009272,"threshold_uncertainty_score":0.00399518,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07925227573118118,"score_gpt":0.3049425367829723,"score_spread":0.2256902610517912,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}