{"id":"W2217689213","doi":"10.1080/2159256x.2015.1102796","title":"The dualistic nature of integrative and conjugative elements","year":2015,"lang":"en","type":"article","venue":"Mobile Genetic Elements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Replicon; Plasmid; Biology; Mobile genetic elements; Adaptation (eye); Horizontal gene transfer; Gene; Genome; Computational biology; Genetics; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002450226,0.0001661827,0.0001544412,0.00001876116,0.0001070934,0.00001760491,0.0001846514,0.00008519678,0.000004259935],"category_scores_gemma":[0.0001145278,0.0001100284,0.00004040832,0.00005730759,0.0002020711,5.524278e-7,0.0002384387,0.00008238098,0.000002435165],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001254757,"about_ca_system_score_gemma":0.00006284034,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001435964,"about_ca_topic_score_gemma":0.00006111708,"domain_scores_codex":[0.9989687,0.00007616079,0.0003131211,0.0002615722,0.0001640742,0.0002163371],"domain_scores_gemma":[0.9992456,0.00002873518,0.0001579214,0.0002638863,0.0002208175,0.00008301617],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005550528,0.0003562541,0.3252699,0.00007141096,0.001917669,0.000007760272,0.003954572,0.0002204625,0.5626563,0.001207751,0.02048154,0.08330124],"study_design_scores_gemma":[0.00629661,0.006521401,0.1468358,0.00007474892,0.0002209813,0.00002740395,0.0139414,0.0003240467,0.3889832,0.007553738,0.4281339,0.001086737],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9888723,0.009366944,0.00008828285,0.00005058926,0.000209611,0.0004394819,0.00006260358,0.000001627587,0.0009085977],"genre_scores_gemma":[0.9967589,0.001112991,0.001294598,0.0001195723,0.00007775518,0.0001238986,0.00002472082,0.00001428827,0.0004733114],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4076524,"threshold_uncertainty_score":0.4486828,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009151521583745822,"score_gpt":0.2696602942596208,"score_spread":0.260508772675875,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}