{"id":"W2222463811","doi":"10.1016/j.jcv.2016.01.002","title":"Loop mediated isothermal amplification (LAMP) for the detection and subtyping of human papillomaviruses (HPV) in oropharyngeal squamous cell carcinoma (OPSCC)","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Virology","topic":"Biosensors and Analytical Detection","field":"Engineering","cited_by":27,"is_retracted":false,"has_abstract":false,"ca_institutions":"Libin Cardiovascular Institute of Alberta; Calgary Laboratory Services; University of Alberta; University of Calgary","funders":"Health Research Board","keywords":"Loop-mediated isothermal amplification; Subtyping; Human papillomavirus; Head and neck squamous-cell carcinoma; Oncology; Medicine; Head and neck cancer; Polymerase chain reaction; Otorhinolaryngology; Gold standard (test); Internal medicine; Cancer research; Cancer; DNA; Biology; Gene; Surgery","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008278446,0.00009189793,0.0003548599,0.00009219472,0.00003851619,0.000006481891,0.00009814501,0.0002069188,0.00002653115],"category_scores_gemma":[0.0004207873,0.00005318277,0.0001304648,0.00007854403,0.0001428908,0.00008065312,0.00001256045,0.0002545718,0.000002082381],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002010582,"about_ca_system_score_gemma":0.00001249389,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001506446,"about_ca_topic_score_gemma":0.00008416181,"domain_scores_codex":[0.998592,0.0001122007,0.0009499236,0.0001058683,0.00008716376,0.0001529115],"domain_scores_gemma":[0.9977328,0.001727813,0.000298933,0.00009985658,0.00007757808,0.00006308743],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007743436,0.0001357233,0.02978089,0.00007979344,0.00004593936,0.000007532594,0.00005832464,0.0002061709,0.8665995,0.0001050443,0.00004017371,0.1021666],"study_design_scores_gemma":[0.004062958,0.001985935,0.937318,0.0000216629,0.0001163517,0.00002495647,0.00004329136,0.01164488,0.04287437,0.0007845649,0.0009735553,0.0001494503],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9911013,0.0004369488,0.00772545,0.0002735946,0.0003118436,0.00009882798,0.000004223871,0.00001060942,0.00003719192],"genre_scores_gemma":[0.999302,0.0002668742,0.00005097311,0.00006237058,0.0002844213,0.000003041981,3.044497e-7,0.00001521075,0.00001483133],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9075372,"threshold_uncertainty_score":0.216873,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0409536903535654,"score_gpt":0.3071982574399017,"score_spread":0.2662445670863363,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}