{"id":"W2227918652","doi":"10.1093/bioinformatics/btv724","title":"Sequence database versioning for command line and Galaxy bioinformatics servers","year":2015,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; University of British Columbia","funders":"Genome Canada","keywords":"Computer science; Server; Sequence (biology); Sequence database; Database; Line (geometry); Software versioning; Software; Computational biology; Programming language; Operating system; Biology; Genetics; Gene; Mathematics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007712214,0.00184817,0.001311095,0.003016654,0.001576926,0.004127211,0.004584793,0.001815187,0.07782043],"category_scores_gemma":[0.02458679,0.002066459,0.001336129,0.003673764,0.0008627291,0.005369427,0.003768193,0.004271274,0.1094036],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001982754,"about_ca_system_score_gemma":0.002952981,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00442739,"about_ca_topic_score_gemma":0.003738605,"domain_scores_codex":[0.9941222,0.000888207,0.001314666,0.001583325,0.001501431,0.0005902743],"domain_scores_gemma":[0.9851472,0.001631105,0.001000624,0.007838099,0.003354838,0.001028131],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001529766,0.0001161976,0.004031103,0.001238501,0.0001543049,0.0003132967,0.0008394745,0.0008714739,0.02373052,0.008247743,0.8475459,0.1113817],"study_design_scores_gemma":[0.0002636477,0.0001784522,0.006557046,0.0002943967,0.0001077608,0.000637517,0.0001608713,0.005372277,0.03764079,0.009954466,0.9385673,0.0002653888],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"methods","genre_scores_codex":[0.006706103,0.000486107,0.1535266,0.0009829937,0.0007966596,0.0007331503,0.1308684,0.6901261,0.01577401],"genre_scores_gemma":[0.03334949,0.0005904196,0.2744601,0.00206526,0.000357731,0.002423298,0.5200211,0.1479498,0.01878271],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.07782043,"threshold_uncertainty_score":0.2603353,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05222392787084609,"score_gpt":0.2768240488197057,"score_spread":0.2246001209488596,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}