{"id":"W2228042522","doi":"10.1371/journal.pone.0142342","title":"Deciphering RNA Regulatory Elements Involved in the Developmental and Environmental Gene Regulation of Trypanosoma brucei","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Trypanosoma brucei; Biology; Regulation of gene expression; Transcriptome; Gene; Computational biology; RNA; Gene expression; Infectivity; Vector (molecular biology); Genetics; Cell biology; Virus","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001091506,0.0002627093,0.0002152333,0.0003704851,0.0001195609,0.0001863878,0.000114964,0.0002588449,0.0006235469],"category_scores_gemma":[0.0002957853,0.0001103299,0.0002923791,0.0001764071,0.0001091149,0.0002359843,0.0001078948,0.0002347322,0.0002483146],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001050248,"about_ca_system_score_gemma":0.0001490538,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003568191,"about_ca_topic_score_gemma":0.00107768,"domain_scores_codex":[0.9999428,0.000009058259,0.000003910672,0.00002231518,0.00001287024,0.000009087789],"domain_scores_gemma":[0.99989,0.0000456651,0.00003211645,0.000007795028,0.0000123349,0.00001219441],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001374852,0.00002155291,0.004793169,0.0002180944,0.00001967171,0.0001908453,0.00005851263,0.001384113,0.9798388,0.0004766653,0.0000940254,0.01276706],"study_design_scores_gemma":[0.0000524347,0.0007951125,0.1320026,0.0001554189,0.0004057228,0.001766351,0.0003204448,0.08130995,0.7633099,0.003556814,0.01624644,0.00007881769],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9621959,0.004040821,0.03140108,0.0001286046,0.00002359024,0.00002808831,0.0006342098,0.0001595307,0.001388044],"genre_scores_gemma":[0.9689409,0.001612833,0.02669412,0.00008021593,0.00002374922,0.00002106051,0.0018144,0.00003527444,0.0007773475],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006235469,"threshold_uncertainty_score":0.002085984,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03949748898251793,"score_gpt":0.2155362328818332,"score_spread":0.1760387438993153,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}