{"id":"W2229802929","doi":"10.1155/2015/138787","title":"Development and Validation of a <i>Pneumocystis jirovecii</i> Real‐time Polymerase Chain Reaction Assay for Diagnosis of <i>Pneumocystis</i> Pneumonia","year":2015,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Paul's Hospital; Calgary Laboratory Services; University of Calgary; University of British Columbia; Alberta Health Services","funders":"Calgary Laboratory Services","keywords":"Pneumocystis jirovecii; Gold standard (test); Pneumocystis pneumonia; Bronchoalveolar lavage; Real-time polymerase chain reaction; Polymerase chain reaction; Medicine; Positive predicative value; Pneumonia; Pneumocystis carinii; Assay sensitivity; Virology; Biology; Pathology; Internal medicine; Predictive value; Lung","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005723825,0.0006477766,0.0004632026,0.000774981,0.0002849996,0.001153799,0.0009949475,0.0009054129,0.0004527681],"category_scores_gemma":[0.008581485,0.0003806478,0.0004227653,0.0003157793,0.000931639,0.0004651698,0.0004327505,0.0006738664,0.0004862522],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005430246,"about_ca_system_score_gemma":0.0007899842,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008355942,"about_ca_topic_score_gemma":0.0008696297,"domain_scores_codex":[0.9933909,0.001752825,0.0007908046,0.001644805,0.002118498,0.0003022152],"domain_scores_gemma":[0.994369,0.001937098,0.001093458,0.0005520703,0.001806854,0.0002414387],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008451252,0.0005831879,0.1525902,0.0002648487,0.00006285515,0.0002278349,0.0004450293,0.001007005,0.8101192,0.000199175,0.0002944578,0.03336113],"study_design_scores_gemma":[0.0002029756,0.005382332,0.1755105,0.0001500398,0.0002442981,0.003856087,0.0003240722,0.01830483,0.7914057,0.0001349059,0.004408046,0.00007623302],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.9403967,0.001295591,0.05531399,0.0001331779,0.0001002802,0.0005601252,0.0004575545,0.0003020419,0.001440403],"genre_scores_gemma":[0.9189741,0.000361666,0.07835699,0.0001609569,0.00005465696,0.0004479842,0.001222758,0.00002941281,0.0003915679],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.005723825,"threshold_uncertainty_score":0.03027081,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009607276461593739,"score_gpt":0.2365664604940562,"score_spread":0.2269591840324624,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}