{"id":"W2231452831","doi":"10.1111/mec.13520","title":"Transcriptome profiling of immune tissues reveals habitat‐specific gene expression between lake and river sticklebacks","year":2016,"lang":"en","type":"article","venue":"Molecular Ecology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"International Max Planck Research School for Environmental, Cellular and Molecular Microbiology","keywords":"Gasterosteus; Biology; Stickleback; Habitat; Ecology; Transcriptome; Population; Local adaptation; Three-spined stickleback; Gene; Gene expression; Genetics; Fish <Actinopterygii>; Fishery","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002434017,0.0002122054,0.0004406212,0.0001207049,0.00009114892,0.00000622627,0.000213871,0.000286683,0.0004671452],"category_scores_gemma":[0.00004809347,0.0001523618,0.000113241,0.00007778396,0.0004408381,0.00006658075,0.0001391353,0.000113063,0.0001686718],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001962601,"about_ca_system_score_gemma":0.00001426047,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002814161,"about_ca_topic_score_gemma":0.00000679206,"domain_scores_codex":[0.9985195,0.0002822547,0.0003986819,0.0003992468,0.00003157806,0.0003687667],"domain_scores_gemma":[0.9993404,0.0001055107,0.0001557674,0.0002951454,0.00007050129,0.00003266414],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001024294,0.00006186829,0.02343856,0.00003448167,0.0001838951,0.00002302297,0.0001863622,2.385585e-7,0.9728604,0.001063626,0.000883562,0.001161587],"study_design_scores_gemma":[0.001742617,0.0001747411,0.07029006,0.00005806795,0.0001192944,0.00001084286,0.00004682245,3.421655e-8,0.9081748,0.0005357706,0.01863798,0.0002089932],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9889919,0.005962161,0.003625234,0.0002817112,0.0002376316,0.0004335839,0.0001577666,0.00004953382,0.0002604612],"genre_scores_gemma":[0.9969276,0.0001947955,0.001184627,0.00006758361,0.00002192471,0.00002409751,0.0002157632,0.00002371272,0.001339868],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06468559,"threshold_uncertainty_score":0.6213135,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008441217598631897,"score_gpt":0.2231195809395815,"score_spread":0.2146783633409496,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}