{"id":"W2232530087","doi":"10.1038/nmeth.3699","title":"Pathways","year":2015,"lang":"en","type":"article","venue":"Nature Methods","topic":"Data Visualization and Analytics","field":"Computer Science","cited_by":3,"is_retracted":false,"has_abstract":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre","funders":"","keywords":"Computational biology; Chemistry; Biology; Cell biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009919939,0.00104343,0.0005116911,0.002302749,0.001673325,0.004930526,0.001310228,0.001156537,0.2844312],"category_scores_gemma":[0.005793923,0.0003663864,0.001005247,0.002427424,0.0007990965,0.003139254,0.003474897,0.001824391,0.08571877],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001446499,"about_ca_system_score_gemma":0.004875829,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007710124,"about_ca_topic_score_gemma":0.006316175,"domain_scores_codex":[0.998907,0.0001671269,0.00006004513,0.0003530248,0.000311991,0.000200907],"domain_scores_gemma":[0.9981223,0.0003111869,0.0001340929,0.0003892953,0.0006338405,0.0004092371],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006853188,0.0001177636,0.005866756,0.001485568,0.0001243675,0.0008405483,0.001038058,0.001336954,0.003235555,0.3455368,0.4327377,0.2069945],"study_design_scores_gemma":[0.00004890091,0.00003503521,0.001434329,0.0003098986,0.00004236997,0.0003801333,0.0004858563,0.0004962703,0.0009819098,0.06279911,0.9329635,0.00002257014],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"other","genre_gemma":"software","genre_scores_codex":[0.01477564,0.002966045,0.03850004,0.005489574,0.002836891,0.0009276011,0.07713314,0.004570228,0.8528008],"genre_scores_gemma":[0.2097824,0.007533562,0.0458068,0.004213659,0.0006874331,0.001737255,0.09954331,0.003852327,0.6268433],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.2844312,"threshold_uncertainty_score":0,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09044882062203148,"score_gpt":0.4474333865705118,"score_spread":0.3569845659484803,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}