{"id":"W2233073084","doi":"10.1128/genomea.01541-15","title":"Genome Sequence of Nitrosomonas communis Strain Nm2, a Mesophilic Ammonia-Oxidizing Bacterium Isolated from Mediterranean Soil","year":2016,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Alberta Innovates; Alberta Innovates - Technology Futures; Natural Sciences and Engineering Research Council of Canada; Universität Hamburg; Government of Canada","keywords":"Mesophile; Strain (injury); Nitrosomonas; Biology; Whole genome sequencing; Bacteria; Oxidizing agent; Ammonia; Mediterranean climate; Microbiology; Genome; Biochemistry; Genetics; Gene; Ecology; Chemistry; Organic chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002569491,0.0009788466,0.00084079,0.001526156,0.0005455834,0.0005058773,0.000433353,0.0009141036,0.002765744],"category_scores_gemma":[0.0008519925,0.0002786312,0.0007249947,0.002305958,0.0002195258,0.0004035427,0.0004949088,0.0007421453,0.001659263],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004880374,"about_ca_system_score_gemma":0.001477392,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01227082,"about_ca_topic_score_gemma":0.01068935,"domain_scores_codex":[0.9997918,0.00002088642,0.00001757944,0.00006734006,0.00007308147,0.00002940464],"domain_scores_gemma":[0.9995366,0.00008431852,0.0001197389,0.0000466861,0.0001024057,0.000110295],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001976006,0.0002308534,0.009034733,0.001497513,0.000122793,0.0009763362,0.0005848,0.000961072,0.9528317,0.0002918416,0.00617765,0.02531457],"study_design_scores_gemma":[0.0006083415,0.002022817,0.5853825,0.0005736507,0.0009730383,0.004481512,0.00118046,0.005079298,0.1280466,0.0008260873,0.2705859,0.0002399225],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5979804,0.004941703,0.007446696,0.0008633962,0.0003543048,0.0003694929,0.3795072,0.0009824671,0.00755425],"genre_scores_gemma":[0.2449477,0.002106956,0.01579795,0.0002982604,0.0001164751,0.0002410213,0.7287853,0.0003045575,0.007401739],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01227082,"threshold_uncertainty_score":0.02439874,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03057305979416421,"score_gpt":0.2349552444530113,"score_spread":0.2043821846588471,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}