{"id":"W2233073084","doi":"10.1128/genomea.01541-15","title":"Genome Sequence of Nitrosomonas communis Strain Nm2, a Mesophilic Ammonia-Oxidizing Bacterium Isolated from Mediterranean Soil","year":2016,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Alberta Innovates; Alberta Innovates - Technology Futures; Natural Sciences and Engineering Research Council of Canada; Universität Hamburg; Government of Canada","keywords":"Mesophile; Strain (injury); Nitrosomonas; Biology; Whole genome sequencing; Bacteria; Oxidizing agent; Ammonia; Mediterranean climate; Microbiology; Genome; Biochemistry; Genetics; Gene; Ecology; Chemistry; Organic chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000259353,0.0003950924,0.0004178216,0.0000814639,0.0002097727,0.00004419766,0.0007939263,0.0001234781,0.003477026],"category_scores_gemma":[0.000009786904,0.0002921557,0.0001452485,0.0002665213,0.0003932927,0.0004725319,0.0004997049,0.000123863,0.0009979478],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003276048,"about_ca_system_score_gemma":0.00002938805,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001102491,"about_ca_topic_score_gemma":0.0001745805,"domain_scores_codex":[0.9973888,0.0001483698,0.0005829994,0.0005693957,0.0006235086,0.0006869352],"domain_scores_gemma":[0.9986605,0.00005092546,0.0002777703,0.000764043,0.00002916101,0.0002176151],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001231694,0.0001823127,0.005275784,0.000007603983,0.0001564039,0.0000452768,0.001327792,0.000019515,0.9909964,0.000002062801,0.00003260216,0.001831117],"study_design_scores_gemma":[0.02684071,0.005429881,0.3262858,0.0007380788,0.001031283,0.0001858497,0.00233559,0.0007982888,0.5041462,0.009125535,0.1169827,0.006100088],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957051,0.0001785776,0.0001478892,0.0003317116,0.0002026078,0.0003692321,0.002451298,0.00006702421,0.0005465141],"genre_scores_gemma":[0.99494,0.0001341882,0.002668093,0.0001438764,0.00009858383,0.00003017161,0.0009420629,0.00004372472,0.0009993125],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4868501,"threshold_uncertainty_score":0.999953,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03057305979416421,"score_gpt":0.2349552444530113,"score_spread":0.2043821846588471,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}