{"id":"W2234353692","doi":"10.1139/cjm-2015-0781","title":"Antigenic and genetic characterization of <i>Bordetella pertussis</i> recovered from Quebec, Canada, 2002–2014: detection of a genetic shift","year":2016,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Institut National de Santé Publique du Québec; Ste. Anne's Hospital; Public Health Agency of Canada","funders":"","keywords":"Bordetella pertussis; Pertactin; Serotype; Biology; Vaccination; Molecular epidemiology; Multilocus sequence typing; Virology; Whooping cough; Incidence (geometry); Microbiology; Pertussis toxin; Genotype; Bacteria; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003521699,0.0003553709,0.0002862514,0.001562193,0.00189687,0.0009862676,0.0006137164,0.0004123142,0.001176957],"category_scores_gemma":[0.0009863555,0.0001843631,0.0003133003,0.003029626,0.0005148928,0.0001808457,0.000313548,0.0004739946,0.0002782208],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01438623,"about_ca_system_score_gemma":0.01095678,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9889767,"about_ca_topic_score_gemma":0.9903932,"domain_scores_codex":[0.9994801,0.00002092456,0.00002694757,0.00009308886,0.0001893773,0.0001896763],"domain_scores_gemma":[0.9986655,0.00004661761,0.0001752812,0.0000325693,0.0008461134,0.0002340559],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004400918,0.000112453,0.9438605,0.0001270093,0.00009976531,0.0005818958,0.001990876,0.0005199424,0.03533578,0.0001756401,0.00315643,0.01359959],"study_design_scores_gemma":[0.000003197066,0.00004244934,0.9966673,0.00001430516,0.00001436035,0.0001395687,0.0006671933,0.0001634538,0.0006948534,0.000003785937,0.00158465,0.000004834047],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9893634,0.0006694184,0.0002161528,0.0001997399,0.00001470013,0.00007203841,0.006655865,0.0000138228,0.002795002],"genre_scores_gemma":[0.9912492,0.0004808024,0.0004295073,0.0002235562,0.00001007006,0.00002365464,0.0054215,0.000009413187,0.002152264],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01438623,"threshold_uncertainty_score":0.1043799,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00474182910238183,"score_gpt":0.169375904382359,"score_spread":0.1646340752799772,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}