{"id":"W2235027711","doi":"10.1650/0010-5422(2005)107[0514:mgefpe]2.0.co;2","title":"MULTIPLE GENE EVIDENCE FOR PARALLEL EVOLUTION AND RETENTION OF ANCESTRAL MORPHOLOGICAL STATES IN THE SHANKS (CHARADRIIFORMES: SCOLOPACIDAE)","year":2005,"lang":"en","type":"article","venue":"Ornithological Applications","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"National Science Foundation","keywords":"Charadriiformes; Phylogenetic tree; Biology; Maximum parsimony; Zoology; Mitochondrial DNA; Evolutionary biology; Phylogenetics; Taxon; Maximum likelihood; Ecology; Gene; Genetics; Clade; Statistics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000278181,0.00009447784,0.0001159837,0.00001951698,0.00009772527,0.0000101748,0.0001535897,0.00009784688,0.0000027482],"category_scores_gemma":[0.0001205042,0.00006277499,0.00005019157,0.00007862066,0.0001904094,0.000002180584,0.00005495759,0.00005681846,0.000001749423],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001003135,"about_ca_system_score_gemma":0.00001342961,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002298164,"about_ca_topic_score_gemma":0.00003784517,"domain_scores_codex":[0.9992561,0.00004507841,0.0002118392,0.0002677955,0.00005992579,0.0001592899],"domain_scores_gemma":[0.9995379,0.000124079,0.00008060939,0.0001749023,0.00005704635,0.00002549303],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001925186,0.0002282638,0.2776246,0.00002474756,0.00001881661,6.019256e-7,0.0001009782,0.0008528539,0.7153419,0.0006941473,0.0001666098,0.004753973],"study_design_scores_gemma":[0.0004888836,0.000424451,0.9846823,0.000007635782,0.00001995897,0.00002778081,0.0001834711,0.0001934627,0.007268167,0.002769676,0.003808715,0.0001254753],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9663973,0.002078036,0.03007209,0.0006124331,0.000008081932,0.0007316065,0.00005522277,0.000003269559,0.00004189539],"genre_scores_gemma":[0.9829018,0.001019441,0.01488691,0.000119953,0.00008307389,0.000906732,0.00006236982,0.000004169802,0.00001560015],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7080737,"threshold_uncertainty_score":0.255989,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05937165947083164,"score_gpt":0.3032419639205293,"score_spread":0.2438703044496976,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}