{"id":"W2237652898","doi":"10.1128/aac.01692-15","title":"Novel Type XII Staphylococcal Cassette Chromosome <i>mec</i> Harboring a New Cassette Chromosome Recombinase, CcrC2","year":2015,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":107,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Recombinase; Extrachromosomal DNA; Gene cassette; Biology; Genetics; Gene; Chromosome; SCCmec; Insertion sequence; Plasmid; Staphylococcus aureus; Transposable element; Genome; Integron; Methicillin-resistant Staphylococcus aureus; Recombination; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002997797,0.0006973713,0.0009888253,0.000216929,0.0002207583,0.0001921861,0.0003327012,0.0003756521,0.0002806329],"category_scores_gemma":[0.00007061588,0.000658043,0.0002505224,0.000667389,0.0002758635,0.0003248281,0.0001453983,0.0005604333,0.0001485452],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002688635,"about_ca_system_score_gemma":0.0006284865,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006026279,"about_ca_topic_score_gemma":0.00007483932,"domain_scores_codex":[0.9967613,0.00004720235,0.0007160943,0.0009836628,0.0004794899,0.001012255],"domain_scores_gemma":[0.9977258,0.00004812764,0.0002964429,0.000723136,0.0003191663,0.0008873613],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001292154,0.000780565,0.01220113,0.0001850251,0.0003669681,0.0003247243,0.0007688216,0.000007024766,0.6367192,0.00009030025,0.3426993,0.004564741],"study_design_scores_gemma":[0.0253786,0.001490387,0.01895308,0.001045835,0.0003785758,0.001018527,0.0002055886,0.000182207,0.1895202,0.0001510779,0.7596666,0.002009275],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9868696,0.000236338,0.0004784295,0.008856358,0.001016346,0.0009769403,0.0001087612,0.0002359182,0.001221338],"genre_scores_gemma":[0.957706,0.001461578,0.005454397,0.02648093,0.001379916,0.0000152225,0.000158763,0.0002745719,0.007068614],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.447199,"threshold_uncertainty_score":0.9995871,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04057335043309845,"score_gpt":0.2904353296654048,"score_spread":0.2498619792323064,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}