{"id":"W2239593216","doi":"10.5376/cmb.2015.05.0006","title":"Comparative study of Codon usage pattern and compositional distribution between whole genome and virulence gene set of &lt;i&gt;Vibrio cholerae N16961&lt;/i&gt;","year":2015,"lang":"en","type":"article","venue":"Computational Molecular Biology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Vibrio cholerae; Virulence; Biology; Gene; Genome; Genetics; Microbiology; Bacteria","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005656252,0.0001428851,0.0002340655,0.0007140794,0.0001512101,0.0002127143,0.00008493301,0.0001439506,0.0005571332],"category_scores_gemma":[0.0003595058,0.00007922654,0.0002121838,0.0007833194,0.0001336064,0.0001350332,0.0001008435,0.0001741582,0.0001545896],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001283936,"about_ca_system_score_gemma":0.0001014909,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001952836,"about_ca_topic_score_gemma":0.001921457,"domain_scores_codex":[0.9998991,0.000008306748,0.000007944048,0.00003964463,0.00002324288,0.00002160537],"domain_scores_gemma":[0.9997467,0.00006249766,0.00008888521,0.00001467222,0.0000421862,0.00004495205],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005008509,0.00003308652,0.02523249,0.0001414298,0.00006273068,0.0002304701,0.0001831916,0.0003127645,0.9669369,0.00009335281,0.0002022316,0.006070489],"study_design_scores_gemma":[0.00001564361,0.0005577996,0.8588575,0.00003079125,0.0001630602,0.001412439,0.0005627992,0.003967207,0.129881,0.0002919228,0.00419819,0.00006170209],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997781,0.0003575375,0.0003378304,0.00001360668,0.000006325141,0.00000216005,0.001208154,0.00001533015,0.0002782267],"genre_scores_gemma":[0.9912583,0.0003058011,0.001479107,0.0000391668,0.00000842943,0.00001255804,0.006304835,0.00002762302,0.0005642691],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001952836,"threshold_uncertainty_score":0.003882945,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03149290872155126,"score_gpt":0.3193551107635436,"score_spread":0.2878622020419924,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}