{"id":"W2252287572","doi":"10.1145/2827696","title":"PAM","year":2016,"lang":"en","type":"article","venue":"ACM Transactions on Modeling and Computer Simulation","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Computer science; Cellular automaton; Bridging (networking); Theoretical computer science; Scope (computer science); Automaton; Graph; Biological system; Particle system; Algorithm; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000832085,0.000687803,0.0006695202,0.0007787039,0.000961326,0.002477517,0.001658119,0.001359161,0.09355071],"category_scores_gemma":[0.002842906,0.0004351319,0.0008774787,0.0008449003,0.0006083722,0.003091278,0.002609117,0.001475705,0.04195713],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007612195,"about_ca_system_score_gemma":0.00108419,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001478284,"about_ca_topic_score_gemma":0.002017236,"domain_scores_codex":[0.9992268,0.0001895185,0.00005456961,0.000212504,0.0002483969,0.00006824188],"domain_scores_gemma":[0.998793,0.0002409147,0.00005384241,0.0006105256,0.0002257136,0.00007597415],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0001253693,0.00007999551,0.0007811369,0.0003129744,0.00005046644,0.000204317,0.0001579509,0.02374406,0.00685367,0.5894923,0.1405286,0.2376692],"study_design_scores_gemma":[0.0000314996,0.00004766809,0.0003262911,0.00006461972,0.00002150841,0.0004240264,0.00004834041,0.1340114,0.004072745,0.1733462,0.6875699,0.00003576214],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.006102832,0.001528093,0.6902705,0.003179943,0.001907506,0.0002108442,0.003022097,0.01545779,0.2783204],"genre_scores_gemma":[0.1886419,0.002955367,0.5492658,0.002424609,0.0009428202,0.0008773002,0.009378046,0.004504773,0.2410094],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.09355071,"threshold_uncertainty_score":0,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01309991620350129,"score_gpt":0.2481735155714209,"score_spread":0.2350735993679196,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}