{"id":"W2252287572","doi":"10.1145/2827696","title":"PAM","year":2016,"lang":"en","type":"article","venue":"ACM Transactions on Modeling and Computer Simulation","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Computer science; Cellular automaton; Bridging (networking); Theoretical computer science; Scope (computer science); Automaton; Graph; Biological system; Particle system; Algorithm; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003472936,0.00007166509,0.0000483096,0.00002702017,0.00007700681,0.00001257466,0.0000604485,0.00007041568,0.000003182113],"category_scores_gemma":[0.000004049179,0.00005216969,0.00003135935,0.00002291376,0.00001238403,0.000004942244,0.000005604238,0.00003063044,0.000002532822],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004584312,"about_ca_system_score_gemma":0.000007921132,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002849138,"about_ca_topic_score_gemma":0.000002980387,"domain_scores_codex":[0.9995924,0.0000145904,0.00008299969,0.0001808502,0.00005008825,0.00007905006],"domain_scores_gemma":[0.9996865,0.00001455363,0.0000145706,0.0002202215,0.00003313873,0.00003101124],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00003072963,0.000008934205,0.00002024573,0.000001811283,0.00001082955,1.359411e-7,0.00001137909,0.7557575,0.003599852,0.00003204631,0.000002076727,0.2405245],"study_design_scores_gemma":[0.0003738548,0.0001317029,0.00006070323,0.00001320932,0.000007949315,0.000002847118,0.000001857632,0.994374,0.001723305,0.002886918,0.000324941,0.00009868037],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.2462734,0.0000279092,0.7534372,0.0001091834,0.00007247186,0.00004359123,0.000003646283,0.00001545305,0.000017246],"genre_scores_gemma":[0.9868215,0.00004604363,0.01278305,0.0001581549,0.0001050136,0.00000406955,0.000006274843,0.00000808282,0.0000678566],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.7406541,"threshold_uncertainty_score":0.2127418,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01309991620350129,"score_gpt":0.2481735155714209,"score_spread":0.2350735993679196,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}