{"id":"W2253330825","doi":"10.1038/icb.2016.16","title":"Linking the T cell receptor to the single cell transcriptome in antigen‐specific human T cells","year":2016,"lang":"en","type":"article","venue":"Immunology and Cell Biology","topic":"T-cell and B-cell Immunology","field":"Immunology and Microbiology","cited_by":124,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"National Health and Medical Research Council; Australian Centre for HIV and Hepatitis Virology Research","keywords":"Transcriptome; Antigen; Cell; Cell biology; Biology; Receptor; Single-cell analysis; Chemistry; Immunology; Molecular biology; Gene; Genetics; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0008075789,0.0005951189,0.0007206208,0.0003200176,0.0009317557,0.00003426343,0.001359791,0.001207043,0.001229958],"category_scores_gemma":[0.00001758064,0.0003174726,0.0002076021,0.0003959612,0.001871191,0.000099103,0.0004173128,0.001085718,0.003163768],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008355417,"about_ca_system_score_gemma":0.00006375635,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001487554,"about_ca_topic_score_gemma":0.0001369488,"domain_scores_codex":[0.9952551,0.001379765,0.000859409,0.001027639,0.00004530097,0.001432862],"domain_scores_gemma":[0.9977538,0.0007803855,0.0002827492,0.001048361,0.00008562014,0.00004909562],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002980142,0.0004360474,0.001436684,0.00001250774,0.00007198979,0.000008204359,0.001481364,0.000001495667,0.9846224,0.0007401399,0.002670786,0.008220359],"study_design_scores_gemma":[0.001794343,0.0006792343,0.0005793335,0.00002127019,0.00001562731,0.00002388272,0.0004845664,1.106334e-7,0.5940431,0.0002777544,0.4017762,0.0003044926],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9554515,0.03183352,0.0002046848,0.003439587,0.003255707,0.0007334849,0.00006879066,0.0001175443,0.004895138],"genre_scores_gemma":[0.9853693,0.005242754,0.00005554678,0.0009442961,0.0001236472,0.0001109269,0.00007652185,0.00005347219,0.008023503],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3991054,"threshold_uncertainty_score":0.9999278,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01380256697058442,"score_gpt":0.2111300730074211,"score_spread":0.1973275060368367,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}