{"id":"W2253470142","doi":"10.1136/gutjnl-2015-309940","title":"Oral versus intravenous iron replacement therapy distinctly alters the gut microbiota and metabolome in patients with IBD","year":2016,"lang":"en","type":"article","venue":"Gut","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":326,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Faecalibacterium prausnitzii; Metabolome; Medicine; Gut flora; Internal medicine; Iron deficiency; Gastroenterology; Ferritin; Feces; Population; Dysbiosis; Physiology; Metabolite; Immunology; Biology; Microbiology; Anemia","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001347692,0.0001397167,0.0001254071,0.00002379538,0.00007163818,0.00001638141,0.0001242293,0.00006966711,0.00001968089],"category_scores_gemma":[0.00001251493,0.00007142344,0.00002334833,0.00004536226,0.0001126904,0.000003486167,0.00006399283,0.00005924538,0.000008442438],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002611385,"about_ca_system_score_gemma":0.00004669945,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007057838,"about_ca_topic_score_gemma":0.0002097609,"domain_scores_codex":[0.9991608,0.00006265201,0.0001455001,0.0002997314,0.00006306305,0.0002682814],"domain_scores_gemma":[0.999535,0.00001281554,0.00006434487,0.0003059645,0.00003046584,0.00005139263],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003922672,0.0001858187,0.06350322,0.00001443071,0.00006881022,0.000001628943,0.0001929363,0.000001089778,0.9131125,0.00004550092,0.001637231,0.01731417],"study_design_scores_gemma":[0.0115671,0.002489012,0.8921402,0.00003025809,0.00002121928,0.000004494286,0.00006211252,6.255049e-7,0.01361002,0.000009647702,0.07976927,0.000296121],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983197,0.0004230209,0.00003478175,0.000627262,0.0001353317,0.0003107727,0.00003722021,0.000005469469,0.0001064631],"genre_scores_gemma":[0.998745,0.0003510925,0.0001521495,0.0003704918,0.00004832993,0.00001160108,0.00005388654,0.00001586504,0.0002515306],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8995025,"threshold_uncertainty_score":0.2912563,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008250099829282638,"score_gpt":0.2285095346891575,"score_spread":0.2202594348598748,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}