{"id":"W2258118934","doi":"10.1128/jcm.02409-15","title":"Variable-Number Tandem-Repeat Analysis of Respiratory and Household Water Biofilm Isolates of “Mycobacterium avium subsp. hominissuis” with Establishment of a PCR Database","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"Saskatchewan Disease Control Laboratory","funders":"National Institute of General Medical Sciences; Amon G. Carter Foundation","keywords":"Biology; Variable number tandem repeat; Amplicon; Tandem repeat; Microbiology; Typing; Insertion sequence; Mycobacterium; Polymerase chain reaction; Subtyping; Population; Mycobacterium avium-intracellulare infection; Virology; Genetics; Genotype; Bacteria; Gene; Genome; Transposable element; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003070834,0.0002301766,0.0001623428,0.0007546074,0.0001981211,0.0002354272,0.0001865951,0.0002647442,0.0006227805],"category_scores_gemma":[0.0009659832,0.0001244314,0.0001901562,0.0005476698,0.0001237669,0.0001165282,0.0002216415,0.0001912841,0.0001476235],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001682974,"about_ca_system_score_gemma":0.0001524611,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002903902,"about_ca_topic_score_gemma":0.002992304,"domain_scores_codex":[0.9996364,0.00008189851,0.00004711803,0.00007555241,0.0001048273,0.00005414627],"domain_scores_gemma":[0.9996526,0.0000741695,0.0001185632,0.00002581318,0.00007539356,0.00005335055],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003909666,0.0001847787,0.7927662,0.0000946809,0.00005390358,0.0009625028,0.0008016876,0.0002488538,0.1809888,0.00009662523,0.0002741332,0.02313689],"study_design_scores_gemma":[0.00002374752,0.0007050408,0.9705419,0.00002918812,0.00004154942,0.002247999,0.0006898257,0.001112945,0.02329277,0.00005582187,0.001252,0.000007264375],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992597,0.00006622324,0.0003042895,0.00001118437,0.000002961527,0.00001761072,0.0002062333,0.000002575236,0.0001292883],"genre_scores_gemma":[0.9973904,0.00008472567,0.001378878,0.00002878462,0.00000723215,0.00002324638,0.0008903082,0.00000228536,0.0001942022],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002903902,"threshold_uncertainty_score":0.005773962,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04738510439306183,"score_gpt":0.3378668632875265,"score_spread":0.2904817588944646,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}