{"id":"W2258118934","doi":"10.1128/jcm.02409-15","title":"Variable-Number Tandem-Repeat Analysis of Respiratory and Household Water Biofilm Isolates of “Mycobacterium avium subsp. hominissuis” with Establishment of a PCR Database","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"Saskatchewan Disease Control Laboratory","funders":"National Institute of General Medical Sciences; Amon G. Carter Foundation","keywords":"Biology; Variable number tandem repeat; Amplicon; Tandem repeat; Microbiology; Typing; Insertion sequence; Mycobacterium; Polymerase chain reaction; Subtyping; Population; Mycobacterium avium-intracellulare infection; Virology; Genetics; Genotype; Bacteria; Gene; Genome; Transposable element; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00283411,0.0002195173,0.002072864,0.0004640653,0.00002129945,0.000008650955,0.0002364283,0.000297844,0.0008326313],"category_scores_gemma":[0.001082168,0.0001045949,0.0004082597,0.0003721658,0.000770323,0.0001703292,0.0001775564,0.0003476738,0.000003552202],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002817201,"about_ca_system_score_gemma":0.0003320349,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005533787,"about_ca_topic_score_gemma":0.0000188015,"domain_scores_codex":[0.9962288,0.0004672667,0.002407329,0.000329021,0.0001710646,0.0003965179],"domain_scores_gemma":[0.9950416,0.00190305,0.001320999,0.0005384401,0.0008326047,0.0003632941],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002952025,0.0005041923,0.4834681,0.0001123012,0.001636433,0.00003283045,0.00002943607,6.659494e-7,0.5098341,0.00001581126,0.001043047,0.0003710419],"study_design_scores_gemma":[0.01427645,0.01229919,0.3722213,0.001333185,0.006500398,0.0006819976,0.000101788,0.000005296692,0.5757621,0.00005330097,0.01640899,0.0003560527],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977893,0.0003631359,0.000212887,0.0006893037,0.0001737059,0.0001807033,0.0005004209,0.000005117762,0.00008545547],"genre_scores_gemma":[0.9961488,0.0009169565,0.00236523,0.0002610663,0.0001647061,0.000003086625,0.00003583597,0.00002067199,0.0000836061],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1112468,"threshold_uncertainty_score":0.9116729,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04738510439306183,"score_gpt":0.3378668632875265,"score_spread":0.2904817588944646,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}