{"id":"W2261599836","doi":"10.1038/srep10134","title":"Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte?","year":2015,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":124,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research; Université de Montréal","funders":"Office of Science; Grantová Agentura České Republiky; Joint Genome Institute; Gordon and Betty Moore Foundation; U.S. Department of Energy","keywords":"Plastid; Endosymbiosis; Biology; Phylogenetic tree; Lineage (genetic); Evolutionary biology; Genome; Phylogenetics; Phylogenomics; Clade; Haptophyte; Gene; Genetics; Chloroplast; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001784917,0.0004235691,0.0006714768,0.001338283,0.000767683,0.001646659,0.0005053614,0.0007776491,0.0008158211],"category_scores_gemma":[0.003395633,0.0003518052,0.0004276219,0.00186983,0.0004158744,0.001738802,0.0009550087,0.001221092,0.0004905185],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003448114,"about_ca_system_score_gemma":0.0004563148,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001060062,"about_ca_topic_score_gemma":0.003170474,"domain_scores_codex":[0.9993796,0.00009803871,0.00005020185,0.0003172522,0.0000713698,0.00008355735],"domain_scores_gemma":[0.9983033,0.000604676,0.0004429346,0.0002105851,0.0002604352,0.0001780741],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000598445,0.00007514256,0.4591591,0.001124054,0.0005501938,0.001058133,0.003707241,0.001679648,0.4652197,0.002143081,0.0008919516,0.06379336],"study_design_scores_gemma":[0.00003349359,0.0001758817,0.9305355,0.0003465753,0.0006634029,0.00140233,0.003868379,0.01324446,0.01900405,0.004670074,0.02597192,0.00008399994],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9845653,0.003198528,0.008263932,0.0004007348,0.00005029376,0.00001047148,0.002423759,0.0001297063,0.0009573766],"genre_scores_gemma":[0.9775879,0.00141302,0.01525034,0.0003770179,0.00004360367,0.00001266507,0.004946273,0.00009477409,0.0002743284],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001784917,"threshold_uncertainty_score":0.009439647,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04700158837306347,"score_gpt":0.2574630618764898,"score_spread":0.2104614735034263,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}