{"id":"W2262352079","doi":"10.1038/srep10241","title":"Lung microbiota across age and disease stage in cystic fibrosis","year":2015,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":398,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; St. Michael's Hospital; University Health Network; University of Toronto","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada; National Sanitarium Association","keywords":"Cystic fibrosis; Biology; Prevotella; Veillonella; Actinomyces; Stenotrophomonas; Lung; Fusobacterium; Burkholderia cepacia complex; Burkholderia; Streptococcus; Microbiology; Pseudomonas; Medicine; Internal medicine; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00163369,0.0001489714,0.0002676416,0.0001800337,0.0001319402,0.0003159402,0.00008276428,0.00004395048,0.00007024768],"category_scores_gemma":[0.002974422,0.0001268053,0.00005276006,0.0005874946,0.0006031839,0.0002209086,0.000209487,0.0001610704,0.00002074175],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001768496,"about_ca_system_score_gemma":0.0004931788,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009071773,"about_ca_topic_score_gemma":0.00007800473,"domain_scores_codex":[0.9975091,0.00005008429,0.000429474,0.0007894547,0.0006758553,0.0005460872],"domain_scores_gemma":[0.9978112,0.00006160469,0.0001141818,0.0008223014,0.000161345,0.001029384],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008218526,0.00046721,0.5237888,0.001196974,0.0000346094,0.04737259,0.002637615,0.0001632336,0.3397807,0.00003978896,0.07935812,0.004338573],"study_design_scores_gemma":[0.003861443,0.000333355,0.5141478,0.001615657,0.0001004057,0.001444817,0.001820245,0.002416359,0.01771317,0.00623845,0.4494013,0.0009070451],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946805,0.002440549,0.0001273107,0.0003501226,0.001347759,0.0006141434,0.00003479315,0.00005204926,0.0003527956],"genre_scores_gemma":[0.9832463,0.000006053072,0.002344772,0.00003463585,0.00004583505,0.00004219812,0.0001125317,0.0000196929,0.01414804],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3700432,"threshold_uncertainty_score":0.5170971,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02283793007651026,"score_gpt":0.3366200196633862,"score_spread":0.313782089586876,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}