{"id":"W2263511745","doi":"10.1016/j.urology.2016.01.012","title":"Decipher Genomic Classifier Measured on Prostate Biopsy Predicts Metastasis Risk","year":2016,"lang":"en","type":"article","venue":"Urology","topic":"Prostate Cancer Diagnosis and Treatment","field":"Medicine","cited_by":163,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia","funders":"","keywords":"Medicine; DECIPHER; Prostatectomy; Prostate cancer; Biopsy; Hazard ratio; Prostate biopsy; Prostate; Oncology; Prostate-specific antigen; Proportional hazards model; Metastasis; Internal medicine; Confidence interval; Cancer; Pathology; Bioinformatics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001942723,0.0002031203,0.0003427455,0.0001036622,0.00006254,0.00000763868,0.00007361379,0.0001184885,0.0005477347],"category_scores_gemma":[0.0001364159,0.0001143245,0.0001150878,0.00008944593,0.0001326031,0.00003835366,0.00003595271,0.0001228611,0.0006517053],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001769055,"about_ca_system_score_gemma":0.0001077717,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002669907,"about_ca_topic_score_gemma":0.00001932046,"domain_scores_codex":[0.9986048,0.0001129138,0.0002423492,0.000452949,0.0001810675,0.0004059257],"domain_scores_gemma":[0.9990037,0.0001537229,0.000119384,0.0004441136,0.00007730798,0.0002017717],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.005009086,0.001226275,0.6203887,0.00003803388,0.00187604,0.0006875237,0.0004134103,0.0000327561,0.02265824,0.0009451934,0.02214946,0.3245753],"study_design_scores_gemma":[0.01296185,0.006578578,0.7000807,0.00007118016,0.001251646,0.000200408,0.00002071272,0.00005589173,0.01744931,0.001705574,0.259273,0.0003511982],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9851943,0.001320846,0.0003090448,0.008440171,0.0004384473,0.0007091644,0.0002327145,0.0001058327,0.003249535],"genre_scores_gemma":[0.9958374,0.001090704,0.000227327,0.001402589,0.0001470629,0.0002287491,0.0000164144,0.00003882327,0.001010961],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3242241,"threshold_uncertainty_score":0.8376571,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0260284905159777,"score_gpt":0.2620684276047101,"score_spread":0.2360399370887324,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}