{"id":"W2267661296","doi":"10.1083/jcb.201507069","title":"Global reorganization of budding yeast chromosome conformation in different physiological conditions","year":2016,"lang":"en","type":"article","venue":"The Journal of Cell Biology","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences; Arnold and Mabel Beckman Foundation; National Institutes of Health; European Molecular Biology Organization; National Science Foundation","keywords":"Biology; Locus (genetics); Genetics; Histone; Gene; Budding yeast; Saccharomyces cerevisiae; Histone acetyltransferase; Genome; Computational biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009294479,0.0001957671,0.0002212033,0.0002204749,0.0001369876,0.0003496399,0.0001649177,0.0001845493,0.000663507],"category_scores_gemma":[0.0001551685,0.0001702916,0.0002152384,0.0002228622,0.0002363901,0.0001576718,0.0002551018,0.0003393409,0.0001156136],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002660268,"about_ca_system_score_gemma":0.0001078322,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001021846,"about_ca_topic_score_gemma":0.001474724,"domain_scores_codex":[0.999915,0.00001159348,0.000005580551,0.00003147677,0.00001874589,0.00001764749],"domain_scores_gemma":[0.9999152,0.00001425049,0.00002398643,0.00001774375,0.00001023742,0.00001853959],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001734691,0.00001729823,0.002049587,0.00003918601,0.00002326453,0.00005503267,0.00002860803,0.001201357,0.9940898,0.00009085372,0.00005379635,0.002177676],"study_design_scores_gemma":[0.00005712865,0.0004123773,0.2395544,0.00002108869,0.00007507615,0.0004031167,0.0002906352,0.01523939,0.7413218,0.0005603894,0.002003669,0.00006089263],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974026,0.0003999854,0.001146852,0.00002480483,0.000007481031,0.000006254488,0.0004449793,0.00006226187,0.0005046895],"genre_scores_gemma":[0.9986406,0.0002203267,0.0004575535,0.00002191092,0.000001484518,0.00001087808,0.0004052521,0.00001539172,0.0002266327],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001021846,"threshold_uncertainty_score":0.002219677,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006084223210146798,"score_gpt":0.2258159154628324,"score_spread":0.2197316922526857,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}