{"id":"W2268489608","doi":"10.1038/ng.3495","title":"The genomic basis of parasitism in the Strongyloides clade of nematodes","year":2016,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":280,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"University of Pennsylvania; National Center for Research Resources; National Institute of Allergy and Infectious Diseases; University of Miyazaki; Japan Society for the Promotion of Science; Institute of Genetics; National Institutes of Health; Max-Planck-Gesellschaft; Wellcome Trust; Academia Sinica; Oregon State University; University of Bristol","keywords":"Biology; Strongyloides stercoralis; Strongyloides; Parasitism; Clade; Nematode; Strongyloidiasis; Genome; Evolutionary biology; Genetics; Gene; Zoology; Ecology; Host (biology); Helminths; Phylogenetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007313953,0.0001816757,0.0001432269,0.0003888489,0.000310316,0.0002810374,0.0001371583,0.0002582732,0.0007394024],"category_scores_gemma":[0.0001772589,0.0001482165,0.0001946351,0.0003040397,0.0001985053,0.0002019643,0.0003988565,0.0002731148,0.0002164524],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001439687,"about_ca_system_score_gemma":0.0001580929,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001010841,"about_ca_topic_score_gemma":0.002314198,"domain_scores_codex":[0.999909,0.000007779752,0.000005632085,0.00003654493,0.00002175117,0.00001935995],"domain_scores_gemma":[0.999824,0.00002374984,0.00007841049,0.00001082119,0.00001815675,0.00004497997],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001870681,0.00001257416,0.03497471,0.0001077293,0.00002547135,0.0004081227,0.000270044,0.00009597874,0.9574911,0.0001600809,0.0001814681,0.006085747],"study_design_scores_gemma":[0.0000133818,0.0001071136,0.972922,0.00003239216,0.00006058016,0.001140769,0.0004546202,0.0005902709,0.02125649,0.000249191,0.003156326,0.00001685348],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997783,0.00066727,0.0003658519,0.00007909523,0.000006085469,0.000005708783,0.0004978287,0.00001340322,0.000581786],"genre_scores_gemma":[0.9970968,0.0004902095,0.0006202883,0.00006332899,0.000009396053,0.000008366018,0.001136539,0.000008329238,0.0005669013],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001010841,"threshold_uncertainty_score":0.002473533,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008714609401515158,"score_gpt":0.2863466382417927,"score_spread":0.2776320288402775,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}