{"id":"W2268489608","doi":"10.1038/ng.3495","title":"The genomic basis of parasitism in the Strongyloides clade of nematodes","year":2016,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":280,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"University of Pennsylvania; National Center for Research Resources; National Institute of Allergy and Infectious Diseases; University of Miyazaki; Japan Society for the Promotion of Science; Institute of Genetics; National Institutes of Health; Max-Planck-Gesellschaft; Wellcome Trust; Academia Sinica; Oregon State University; University of Bristol","keywords":"Biology; Strongyloides stercoralis; Strongyloides; Parasitism; Clade; Nematode; Strongyloidiasis; Genome; Evolutionary biology; Genetics; Gene; Zoology; Ecology; Host (biology); Helminths; Phylogenetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000124818,0.00007156847,0.000121846,0.00004843443,0.00006936144,0.000004247298,0.0002980546,0.0002125883,0.00006046313],"category_scores_gemma":[0.00005763782,0.00003214069,0.00006483015,0.00008267975,0.0001891493,0.00001522157,0.00003046025,0.0002519765,0.00002645266],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001096128,"about_ca_system_score_gemma":0.00002732076,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000188402,"about_ca_topic_score_gemma":0.0001440423,"domain_scores_codex":[0.9994107,0.0001115007,0.0002097205,0.00009023533,0.00002804641,0.0001497606],"domain_scores_gemma":[0.9990699,0.0005035025,0.0001114957,0.0002652861,0.00004489588,0.000004870864],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006222612,0.00006491012,0.07548703,0.000007317255,0.0001056041,8.992187e-7,0.0004412585,0.00001026448,0.9024675,0.005218199,0.003171028,0.01296375],"study_design_scores_gemma":[0.0004631399,0.0001012205,0.6103941,0.00004224084,0.00003795722,0.0000372262,0.0004805719,0.000001566948,0.3274862,0.001013226,0.05986653,0.00007604136],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9809085,0.01688692,0.00003792014,0.0009033651,0.0002983547,0.0001026461,0.00005767212,0.000003844945,0.0008007803],"genre_scores_gemma":[0.9980467,0.001285283,0.00007520174,0.00007470269,0.00002375205,0.00000654794,0.00000454642,0.000005182453,0.0004780946],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5749813,"threshold_uncertainty_score":0.1639675,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008714609401515158,"score_gpt":0.2863466382417927,"score_spread":0.2776320288402775,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}