{"id":"W2270476927","doi":"10.1021/acs.jproteome.5b01018","title":"g2pDB: A Database Mapping Protein Post-Translational Modifications to Genomic Coordinates","year":2016,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Computational biology; Proteomics; Posttranslational modification; Biology; Database; Genetics; Computer science; Gene; Biochemistry; Enzyme","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001346359,0.00009691389,0.0001354136,0.0002448409,0.0001614966,0.00003157408,0.0003533605,0.00006007588,0.00003790044],"category_scores_gemma":[0.0004454684,0.00006657925,0.00008221917,0.000172551,0.000098651,0.000002682908,0.0001699388,0.0001416542,0.00002610822],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003418229,"about_ca_system_score_gemma":0.0003444716,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000162111,"about_ca_topic_score_gemma":0.00001110961,"domain_scores_codex":[0.9986786,0.0001405419,0.0003262673,0.0002059637,0.000341865,0.0003067601],"domain_scores_gemma":[0.9984016,0.0000448721,0.0001006766,0.0002579718,0.001033287,0.0001616112],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001422699,0.00005275248,0.0008314638,0.00001764701,0.0000670852,0.00000399719,0.00008399923,0.00001363315,0.9952585,0.0002223573,0.0005602349,0.00274612],"study_design_scores_gemma":[0.0010809,0.001156915,0.02747687,0.0001597521,0.000009512481,0.00006707662,0.0002415199,0.000009367616,0.8931837,0.001442608,0.07493594,0.000235859],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9842591,0.0008383256,0.006424542,0.007523747,0.00004273684,0.0006283235,0.0001312338,9.379434e-7,0.0001510263],"genre_scores_gemma":[0.9872515,0.0001304373,0.01135663,0.0000368165,0.000360236,0.00007894349,0.000005297155,0.00001740252,0.000762706],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1020748,"threshold_uncertainty_score":0.2715023,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06836558342576095,"score_gpt":0.3446567166359997,"score_spread":0.2762911332102388,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}