{"id":"W2270476927","doi":"10.1021/acs.jproteome.5b01018","title":"g2pDB: A Database Mapping Protein Post-Translational Modifications to Genomic Coordinates","year":2016,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Computational biology; Proteomics; Posttranslational modification; Biology; Database; Genetics; Computer science; Gene; Biochemistry; Enzyme","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001496393,0.004233656,0.002314691,0.006731956,0.001023038,0.003323105,0.004839784,0.002034253,0.01942627],"category_scores_gemma":[0.004989863,0.001360042,0.001411473,0.01066188,0.0005513558,0.002867465,0.003319191,0.001840449,0.02595012],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001064472,"about_ca_system_score_gemma":0.002070644,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004133405,"about_ca_topic_score_gemma":0.003333642,"domain_scores_codex":[0.9992018,0.0001168473,0.0001601336,0.000252795,0.0001682698,0.0001001541],"domain_scores_gemma":[0.9980965,0.0004604029,0.0003702367,0.0005520537,0.0002382378,0.0002826013],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00562468,0.0005437161,0.01480501,0.01105495,0.0008595282,0.003669565,0.001193799,0.007513712,0.09449459,0.01178529,0.7294642,0.118991],"study_design_scores_gemma":[0.001419727,0.0005301039,0.02308103,0.0008483106,0.000527471,0.004292182,0.0005623366,0.01876474,0.06587745,0.01733248,0.8662934,0.0004708906],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.01957437,0.001476631,0.0496425,0.000268336,0.0001667903,0.0002563374,0.7857323,0.1348371,0.00804559],"genre_scores_gemma":[0.02252974,0.0009858498,0.03591392,0.0001263035,0.00002775261,0.0002939253,0.9317124,0.00698019,0.001429935],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.01942627,"threshold_uncertainty_score":0.0649873,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06836558342576095,"score_gpt":0.3446567166359997,"score_spread":0.2762911332102388,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}