{"id":"W2271482357","doi":"10.1038/srep17434","title":"Genome-wide expression analysis offers new insights into the origin and evolution of Physcomitrella patens stress response","year":2015,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"King Abdullah University of Science and Technology; York University; New York University Abu Dhabi","keywords":"Physcomitrella patens; Abiotic stress; Biology; Transcriptome; Gene; Plant evolution; Abiotic component; Abscisic acid; Genome; Genomics; Computational biology; Functional genomics; Biotic stress; Genetics; Evolutionary biology; Gene expression; Ecology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001495645,0.0002905124,0.0001837007,0.0005772611,0.0002155604,0.0003974534,0.0001145639,0.0002079824,0.0004510253],"category_scores_gemma":[0.0001388376,0.0001204069,0.0002187955,0.0006572852,0.0002003121,0.000306696,0.0002862315,0.0003790437,0.0001383402],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002054264,"about_ca_system_score_gemma":0.0001904222,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001085381,"about_ca_topic_score_gemma":0.001226861,"domain_scores_codex":[0.9999186,0.000008123911,0.000005543123,0.00003677505,0.00001814235,0.00001277314],"domain_scores_gemma":[0.9999212,0.00001974998,0.00002317885,0.00001139761,0.00001529156,0.000009287029],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004468664,0.000009005664,0.008025279,0.00005665554,0.00001626366,0.00005729184,0.00005279155,0.0002070828,0.9864699,0.000150938,0.0000557734,0.004854384],"study_design_scores_gemma":[0.000009299644,0.0001271829,0.7638895,0.00002683315,0.0001256202,0.0004789075,0.0003572569,0.005022886,0.2174681,0.001422398,0.01104693,0.0000251224],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9844124,0.002182513,0.009161981,0.0002005349,0.00001513119,0.00001407734,0.002755784,0.0001438791,0.001113769],"genre_scores_gemma":[0.9874691,0.00214962,0.004683057,0.00009084055,0.00001743698,0.00003069082,0.004077698,0.00003162564,0.001450071],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001085381,"threshold_uncertainty_score":0.002158165,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02983942676891647,"score_gpt":0.2535338501284758,"score_spread":0.2236944233595594,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}