{"id":"W2272673806","doi":"10.1371/journal.pone.0144112","title":"Phylogeographic Structure of the White-Footed Mouse and the Deer Mouse, Two Lyme Disease Reservoir Hosts in Québec","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Ministère des Ressources naturelles et des Forêts; Université de Montréal","funders":"Université de Montréal; Génome Québec; Institut National de Santé Publique du Québec; Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Peromyscus; Phylogeography; Biology; Borrelia burgdorferi; Lyme disease; Deer mouse; Zoology; Genetic structure; Range (aeronautics); Ecology; Evolutionary biology; Phylogenetics; Genetic variation; Genetics; Gene; Virology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000161588,0.0001818364,0.0003169734,0.0001106009,0.0001106868,0.00001866405,0.0003644693,0.0001195846,0.00008250875],"category_scores_gemma":[0.0007716127,0.0001063334,0.00008345176,0.0003067038,0.0007850829,0.00009921306,0.0002186436,0.0003203521,0.00001230556],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004482253,"about_ca_system_score_gemma":0.0002224968,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005663386,"about_ca_topic_score_gemma":0.02986602,"domain_scores_codex":[0.9986023,0.0005244896,0.0002521295,0.0002585097,0.00009360768,0.0002689676],"domain_scores_gemma":[0.9988732,0.0001522258,0.0001365437,0.0006275813,0.0001491815,0.00006125119],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009442006,0.0007193214,0.8572317,0.00004417623,0.0004593466,0.000002291672,0.0007737061,0.00005560176,0.1389523,0.0004515517,0.0003463321,0.00001941244],"study_design_scores_gemma":[0.01113649,0.0001727069,0.8813717,0.0001361758,0.0006410941,0.000009918443,0.0003762131,0.00003159819,0.1038056,0.001734075,0.00020438,0.0003801007],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921181,0.005469755,7.004578e-7,0.001496353,0.00006150576,0.0005316114,0.000195723,0.00005227973,0.00007402687],"genre_scores_gemma":[0.9987734,0.00005151061,0.0000058603,0.0002602647,0.00002496806,0.00003328621,0.00002906955,0.00002326828,0.0007983946],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03514676,"threshold_uncertainty_score":0.9878364,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01780805881323466,"score_gpt":0.2125101866513748,"score_spread":0.1947021278381402,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}