{"id":"W2273208855","doi":"10.1093/gbe/evw011","title":"Group II Intron-Mediated<i>Trans</i>-Splicing in the Gene-Rich Mitochondrial Genome of an Enigmatic Eukaryote,<i>Diphylleia rotans</i>","year":2016,"lang":"en","type":"letter","venue":"Genome Biology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"Japan Society for the Promotion of Science","keywords":"Biology; Intron; Trans-splicing; Group II intron; RNA splicing; Genetics; Group I catalytic intron; Gene; Eukaryote; Genome; Mitochondrial DNA; Phylogenetic tree; Evolutionary biology; RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004553966,0.0004761168,0.0005792177,0.0001344929,0.0002722271,0.00001496224,0.0005639591,0.001195934,0.00001122762],"category_scores_gemma":[0.00004093905,0.0003410155,0.000152256,0.0001399452,0.000415645,0.000003785401,0.0002187531,0.0005037423,0.000004547379],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005399533,"about_ca_system_score_gemma":0.00009158332,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001043198,"about_ca_topic_score_gemma":0.0001467405,"domain_scores_codex":[0.9973087,0.0004502308,0.0006295151,0.0008118456,0.0001417125,0.0006580179],"domain_scores_gemma":[0.9988274,0.00008284806,0.0002927994,0.0006566694,0.00008408767,0.00005617335],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001274524,0.00004621419,0.001423416,0.00007474496,0.0001976366,0.000007701932,0.0003969625,0.00001030276,0.9949805,0.00004836739,0.002344491,0.0003422124],"study_design_scores_gemma":[0.004211175,0.004977983,0.09588517,0.00008668014,0.0004564309,0.0002147733,0.0002827169,0.00003116991,0.004662609,0.005588857,0.8816034,0.001999007],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9667839,0.01361371,0.001408273,0.01580657,0.0006796885,0.000870808,0.0006700695,0.000008474222,0.0001585302],"genre_scores_gemma":[0.9640324,0.003264959,0.0006645116,0.02262549,0.00681503,0.0001925821,0.00221351,0.00006524939,0.0001262804],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9903179,"threshold_uncertainty_score":0.9999042,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00580919687046789,"score_gpt":0.2073991379390196,"score_spread":0.2015899410685517,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}