{"id":"W2273246571","doi":"10.1038/ncomms9554","title":"Systematic analysis of somatic mutations impacting gene expression in 12 tumour types","year":2015,"lang":"en","type":"article","venue":"Nature Communications","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":119,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia Hospital; University of British Columbia; University of Toronto; BC Cancer Agency","funders":"Canadian Cancer Society Research Institute; Genome British Columbia; Michael Smith Health Research BC; BC Cancer Foundation; Genome Canada","keywords":"Biology; Somatic cell; Genetics; Gene; Computational biology; Mutation; Gene expression; Germline mutation","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001327781,0.0002739804,0.000304588,0.0006455292,0.0002195203,0.0003659624,0.0002408205,0.0002096145,0.000693941],"category_scores_gemma":[0.002169129,0.0001913278,0.0005335209,0.0005482218,0.0003110443,0.0002149675,0.0004404318,0.0002801207,0.0001144037],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004205365,"about_ca_system_score_gemma":0.0005768457,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001557917,"about_ca_topic_score_gemma":0.002874623,"domain_scores_codex":[0.9994509,0.0001628935,0.00003867974,0.0001519377,0.0001583782,0.00003720448],"domain_scores_gemma":[0.9987514,0.0008608169,0.0001558639,0.0001068459,0.00008794184,0.00003704734],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001033516,0.0001597792,0.4094385,0.0003535369,0.000759799,0.0003408001,0.0002045077,0.1244402,0.3781686,0.003568809,0.0009983237,0.08053355],"study_design_scores_gemma":[0.00009599533,0.0005302127,0.3329998,0.00002394958,0.000427009,0.0005479101,0.000156811,0.5282854,0.125343,0.009248912,0.002278291,0.000062673],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9532754,0.000247248,0.043516,0.00007596455,0.000005259134,0.00003894232,0.002157111,0.0002483114,0.0004358179],"genre_scores_gemma":[0.9745555,0.0001199017,0.02227381,0.00005853059,0.000004309566,0.00004745727,0.002640816,0.0000465947,0.0002531599],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001557917,"threshold_uncertainty_score":0.007022083,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01997073186673607,"score_gpt":0.3127720577749151,"score_spread":0.292801325908179,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}