{"id":"W2273757900","doi":"10.1089/aid.2014.5489.abstract","title":"Using Viral Dynamics to Connect Clinical Markers of Disease Progression to Sequence Evolution during HIV Infection","year":2014,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Viral load; Biology; Human immunodeficiency virus (HIV); Virology; Viral evolution; Viral infection; Immune escape; Immune system; Evolutionary biology; Genetics; Virus; Gene; RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001358532,0.0003691576,0.0003443803,0.0009376907,0.0002834247,0.0009753095,0.0004906349,0.0007532358,0.0006761679],"category_scores_gemma":[0.008204672,0.0003866391,0.0003276974,0.0005819111,0.0007165352,0.001137408,0.0007168145,0.0006491662,0.0001094685],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001182453,"about_ca_system_score_gemma":0.0004315864,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006664956,"about_ca_topic_score_gemma":0.003410871,"domain_scores_codex":[0.9996025,0.0002300927,0.00001489158,0.00008275977,0.00002730072,0.00004250745],"domain_scores_gemma":[0.9985159,0.0009461694,0.0003035244,0.00009836775,0.0000545953,0.00008136065],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","study_design_scores_codex":[0.0002833877,0.00008770783,0.1485795,0.00004211564,0.0001285689,0.0001403165,0.0003478907,0.8211519,0.008265773,0.009051157,0.0001993243,0.01172237],"study_design_scores_gemma":[0.00002046789,0.00009598641,0.02414979,0.00001660967,0.00002292169,0.000127059,0.00009333199,0.9638022,0.001037415,0.01019893,0.0004072956,0.00002797355],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9640709,0.0002697622,0.03378597,0.0003460833,0.00001431149,0.00003455314,0.0002256948,0.00006257421,0.001190165],"genre_scores_gemma":[0.99597,0.000102417,0.003566834,0.0000293415,0.000004777947,0.00002440471,0.00009126206,0.000009541412,0.0002013984],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006664956,"threshold_uncertainty_score":0.01325232,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09783984258670575,"score_gpt":0.4374381099720399,"score_spread":0.3395982673853341,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}