{"id":"W2273757900","doi":"10.1089/aid.2014.5489.abstract","title":"Using Viral Dynamics to Connect Clinical Markers of Disease Progression to Sequence Evolution during HIV Infection","year":2014,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Viral load; Biology; Human immunodeficiency virus (HIV); Virology; Viral evolution; Viral infection; Immune escape; Immune system; Evolutionary biology; Genetics; Virus; Gene; RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001392462,0.0001417654,0.0002617554,0.000473422,0.0006130799,0.00004446062,0.0001590901,0.0001230053,0.00009178527],"category_scores_gemma":[0.001063381,0.0001193985,0.00007224609,0.0002808804,0.0005363059,0.0001359797,0.0002935975,0.0003876856,0.000198243],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002817195,"about_ca_system_score_gemma":0.0001301028,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008174755,"about_ca_topic_score_gemma":0.0002970242,"domain_scores_codex":[0.9975218,0.0008788397,0.0003281572,0.0004370468,0.0001848252,0.0006493049],"domain_scores_gemma":[0.9988022,0.0002786543,0.00005747411,0.0003274628,0.0002432741,0.0002909669],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002189987,0.0002492827,0.9050016,0.00008467519,0.00008324573,0.000008160773,0.00004714021,0.000008585856,0.08374061,0.003155202,0.0002858124,0.005145743],"study_design_scores_gemma":[0.001460167,0.007230625,0.9818686,0.0002420475,0.00002236197,0.000005943309,0.00006813551,0.00002552161,0.007481243,0.0006718304,0.0007420683,0.0001814306],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998125,0.0001411994,0.0006438179,0.00007843343,0.00007489124,0.0005821207,0.00009673858,0.0000368059,0.0002210068],"genre_scores_gemma":[0.9990095,0.00003714912,0.0002924571,0.00001660291,0.00005524746,0.0000471216,0.00007563151,0.00001628412,0.0004500092],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07686707,"threshold_uncertainty_score":0.4868929,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09783984258670575,"score_gpt":0.4374381099720399,"score_spread":0.3395982673853341,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}