{"id":"W2274123509","doi":"10.1128/genomea.01768-15","title":"Full Genome of <i>Phialocephala scopiformis</i> DAOMC 229536, a Fungal Endophyte of Spruce Producing the Potent Anti-Insectan Compound Rugulosin","year":2016,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Plant and fungal interactions","field":"Agricultural and Biological Sciences","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Carleton University","funders":"Office of Science; Natural Sciences and Engineering Research Council of Canada; Government of Canada; Agriculture and Agri-Food Canada; Joint Genome Institute; U.S. Department of Energy","keywords":"Endophyte; Biology; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003301444,0.0001987367,0.0002992101,0.00002970183,0.0002463523,0.00003379729,0.0004674823,0.00005873924,0.0002516519],"category_scores_gemma":[0.00002766892,0.00006446831,0.0001388149,0.0003252265,0.0001411071,0.0002210566,0.0001416713,0.0001009961,0.00006099003],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005078958,"about_ca_system_score_gemma":0.00002354183,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000252536,"about_ca_topic_score_gemma":0.0001772299,"domain_scores_codex":[0.9983303,0.00007162315,0.0004888105,0.0003434047,0.00038042,0.0003854734],"domain_scores_gemma":[0.9991245,0.0001283996,0.0003287783,0.0001630229,0.0001775213,0.00007783448],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001210329,0.0002318391,0.005589164,0.00001774353,0.00006592322,0.000005135105,0.0001614335,0.000005555739,0.9918098,0.00005564427,0.0001376514,0.001799077],"study_design_scores_gemma":[0.002596815,0.003334407,0.6788893,0.0005892037,0.0002141317,0.0002425195,0.0009218102,0.00003492833,0.1553677,0.0007126266,0.1558951,0.001201396],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946864,0.0003854299,0.000022295,0.0006622,0.0003151011,0.0004134772,0.001360242,0.00002493959,0.002129948],"genre_scores_gemma":[0.9986283,0.0002282943,0.00003853718,0.0001179905,0.0003306846,0.00001747171,0.0001241083,0.000002133616,0.0005125377],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8364421,"threshold_uncertainty_score":0.2755412,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02151681304557455,"score_gpt":0.2124521699041021,"score_spread":0.1909353568585276,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}