{"id":"W2275471133","doi":"10.1186/s12879-016-1370-0","title":"Population structure, epidemiology and antibiotic resistance patterns of Streptococcus pneumoniae serotype 5: prior to PCV-13 vaccine introduction in Eastern Gambia","year":2016,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Medical Research Council; Imperial College London","keywords":"Multilocus sequence typing; Serotype; Streptococcus pneumoniae; Biology; Population; Antibiotic resistance; Vaccination; Virology; Pneumococcal conjugate vaccine; Molecular epidemiology; Genotyping; Microbiology; Genotype; Medicine; Antibiotics; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001495396,0.000207145,0.0005190976,0.0003579419,0.00007837034,0.000008381117,0.00004849188,0.0001196514,0.00007647358],"category_scores_gemma":[0.001015726,0.0001503436,0.0000829839,0.0002759514,0.00003936693,0.0001322241,0.00004429189,0.0001044859,0.00001163021],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001272014,"about_ca_system_score_gemma":0.00006325496,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002060568,"about_ca_topic_score_gemma":0.005580769,"domain_scores_codex":[0.9983727,0.0002216444,0.0005334291,0.000457623,0.0001197281,0.0002949117],"domain_scores_gemma":[0.9988777,0.0002065975,0.0002126376,0.0003713225,0.0001190491,0.0002127138],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001454719,0.0001587515,0.9794365,0.0003117412,0.00003146562,0.000005142985,0.00003145186,0.00007030453,0.01630054,0.000130568,0.00007149151,0.003306543],"study_design_scores_gemma":[0.001627985,0.0003923681,0.9960524,0.0003380654,0.0001052363,0.00002192507,0.0000168367,0.00001867609,0.0005187052,0.0004054289,0.0003379446,0.0001644623],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971487,0.0001370851,0.0004726145,0.0008582816,0.0003543619,0.0008072448,0.0001014435,0.0000902264,0.00003005155],"genre_scores_gemma":[0.9990783,0.00004758867,0.00001916641,0.000195558,0.0003924281,0.00002698533,0.00002458336,0.00002600913,0.0001893413],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01661584,"threshold_uncertainty_score":0.6130832,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01473400326869223,"score_gpt":0.2880198245674144,"score_spread":0.2732858212987222,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}