{"id":"W2275471133","doi":"10.1186/s12879-016-1370-0","title":"Population structure, epidemiology and antibiotic resistance patterns of Streptococcus pneumoniae serotype 5: prior to PCV-13 vaccine introduction in Eastern Gambia","year":2016,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Medical Research Council; Imperial College London","keywords":"Multilocus sequence typing; Serotype; Streptococcus pneumoniae; Biology; Population; Antibiotic resistance; Vaccination; Virology; Pneumococcal conjugate vaccine; Molecular epidemiology; Genotyping; Microbiology; Genotype; Medicine; Antibiotics; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004004318,0.0003153142,0.0002651727,0.0008392824,0.000421305,0.0007485713,0.0004016544,0.0004768201,0.0007989858],"category_scores_gemma":[0.0008636898,0.0003145471,0.0001948289,0.000917685,0.0004259297,0.0004245322,0.0004836268,0.0003998556,0.0001283334],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009261699,"about_ca_system_score_gemma":0.0005223199,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.07407369,"about_ca_topic_score_gemma":0.0825386,"domain_scores_codex":[0.9997209,0.00005554952,0.00001639359,0.00008550003,0.00003343998,0.00008807876],"domain_scores_gemma":[0.9997252,0.0000379497,0.0001002784,0.00001798739,0.00004671918,0.0000719049],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001456685,0.00008613683,0.9927688,0.00001582121,0.00003731235,0.0003817703,0.00134662,0.0002099125,0.001501888,0.00005628545,0.0001098551,0.003339915],"study_design_scores_gemma":[0.00000244645,0.00005911361,0.9987871,0.00001223069,0.000006991057,0.0001120787,0.0007171028,0.0001497221,0.00003666375,0.000008649333,0.0001051839,0.00000279557],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996684,0.00006903827,0.00003644176,0.00001327758,0.000001011358,0.00000563922,0.00006975188,0.000001147655,0.0001354],"genre_scores_gemma":[0.9995337,0.00008696993,0.00007992661,0.00001669391,0.000001610746,0.000007037812,0.0001640444,8.831246e-7,0.0001091105],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07407369,"threshold_uncertainty_score":0.1472851,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01473400326869223,"score_gpt":0.2880198245674144,"score_spread":0.2732858212987222,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}