{"id":"W2275667693","doi":"10.1101/041012","title":"<i>foxc1a</i> genetically interacts with <i>ripply1</i> to regulate <i>mesp-ba</i> expression and somitogenesis in the zebrafish embryo","year":2016,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Developmental Biology and Gene Regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; University of Alberta; Shriners Hospitals for Children; Canadian Institutes of Health Research; Women and Children's Health Research Institute; Children's Health Research Institute","keywords":"Somitogenesis; Somite; Zebrafish; Cell biology; Gene knockdown; Biology; Anatomy; Embryo; Genetics; Gene; Embryogenesis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005750413,0.0005485242,0.0003956376,0.0001370861,0.0001461854,0.0001201086,0.0005915217,0.0006223702,0.000006876813],"category_scores_gemma":[0.00008483908,0.0003803929,0.00008236663,0.0002135799,0.0001904343,0.00001397561,0.0007210867,0.0002903106,0.00001790913],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005219032,"about_ca_system_score_gemma":0.000287105,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006985993,"about_ca_topic_score_gemma":0.00001695847,"domain_scores_codex":[0.9972923,0.0002682854,0.000455794,0.001187702,0.0002636024,0.0005322973],"domain_scores_gemma":[0.9982748,0.00004123839,0.0002282394,0.001057825,0.0001852235,0.000212674],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002808922,0.00007064253,0.007213424,0.00006776489,0.0000642817,0.00001984647,0.0000153511,0.00002440354,0.9908307,0.00003155334,0.001348055,0.00003312413],"study_design_scores_gemma":[0.0006806004,0.0001638431,0.1334647,0.0003645268,0.00003612476,3.518201e-7,0.000004401076,0.000004810787,0.8547182,0.000005560503,0.009966459,0.0005903984],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953907,0.001069799,0.001120992,0.0009637747,0.0004106071,0.0008740796,0.00008874534,0.00004224229,0.00003904479],"genre_scores_gemma":[0.993421,0.0003174537,0.003473362,0.002033816,0.0003609568,0.0002830501,0.000003667338,0.00008022194,0.00002646531],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1361125,"threshold_uncertainty_score":0.9998648,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00564297568859413,"score_gpt":0.2022449261878432,"score_spread":0.1966019504992491,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}