{"id":"W2275798475","doi":"10.1371/journal.pone.0145082","title":"Genome Wide Association Studies (GWAS) Identify QTL on SSC2 and SSC17 Affecting Loin Peak Shear Force in Crossbred Commercial Pigs","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Mitacs; Iowa State University; University of Guelph","keywords":"Genome-wide association study; Tenderness; Candidate gene; Biology; Quantitative trait locus; Genetics; Loin; Meat tenderness; Single-nucleotide polymorphism; Genetic association; Gene; Genetic architecture; Phenotypic trait; Phenotype; Genotype; Anatomy; Food science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000886382,0.0004398924,0.0004118467,0.0008592493,0.000191789,0.0004612916,0.0002431111,0.0004151438,0.002741942],"category_scores_gemma":[0.0007524011,0.0002096099,0.0006062721,0.001320429,0.0002722486,0.000104721,0.0003946981,0.0003637003,0.0002465074],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001040204,"about_ca_system_score_gemma":0.0001885125,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001430676,"about_ca_topic_score_gemma":0.002283503,"domain_scores_codex":[0.9995826,0.00009700516,0.0000385092,0.0001621774,0.00006362482,0.00005608037],"domain_scores_gemma":[0.9991358,0.0004220164,0.0002452208,0.00006316885,0.00005422284,0.00007965195],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002193421,0.0001086629,0.7894339,0.000209119,0.001536545,0.001842748,0.0006004542,0.0007918635,0.1884876,0.0001757918,0.0003673661,0.01425262],"study_design_scores_gemma":[0.00003755662,0.0001287022,0.9963164,0.00001170642,0.0002418078,0.000369289,0.00008168468,0.0004076607,0.001823216,0.00005520351,0.0005198712,0.000006844685],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982303,0.0002940502,0.000739951,0.00002785399,0.00000463749,0.000004967128,0.0004677323,0.00001941518,0.0002110778],"genre_scores_gemma":[0.996587,0.0002406037,0.001108025,0.00006748017,0.00001789165,0.00001928892,0.001416106,0.00001686009,0.0005266804],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002741942,"threshold_uncertainty_score":0.009172678,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03431307992255331,"score_gpt":0.2715500850717906,"score_spread":0.2372370051492373,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}