{"id":"W2275877493","doi":"10.1038/nature11404","title":"Comprehensive genomic characterization of squamous cell lung cancers","year":2012,"lang":"en","type":"article","venue":"Nature","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4016,"is_retracted":false,"has_abstract":true,"ca_institutions":"Kensington Health; Ottawa Hospital; Ontario Institute for Cancer Research; Canada's Michael Smith Genome Sciences Centre","funders":"National Cancer Institute; National Human Genome Research Institute; BC Cancer Agency; National Institutes of Health","keywords":"CDKN2A; Cancer research; Biology; Lung cancer; PTEN; Epigenomics; Comparative genomic hybridization; Cancer; Gene; Pathology; Genome; Medicine; Genetics; PI3K/AKT/mTOR pathway; Signal transduction; DNA methylation; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000197185,0.0002102264,0.0003656381,0.002123742,0.0002813514,0.0003053504,0.0001847832,0.0001804372,0.001592657],"category_scores_gemma":[0.0004666021,0.00009096967,0.0003561087,0.001473875,0.0001204666,0.0001314652,0.0004086874,0.0002226958,0.0004178088],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002176419,"about_ca_system_score_gemma":0.0003445591,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001943742,"about_ca_topic_score_gemma":0.003343646,"domain_scores_codex":[0.9997404,0.00002293133,0.0000205557,0.00007522034,0.0000987264,0.00004218589],"domain_scores_gemma":[0.9997409,0.00004737055,0.00004608138,0.00003546885,0.00008919701,0.00004103072],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005306285,0.00004202449,0.1792392,0.0007686683,0.0003807449,0.001348118,0.000291082,0.001402928,0.7225319,0.0004703539,0.002914171,0.09008018],"study_design_scores_gemma":[0.00001870351,0.0001795118,0.9041173,0.00004435427,0.0002855852,0.004498914,0.0001937442,0.0009774677,0.06694292,0.0004426057,0.02227889,0.00001997755],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9281713,0.01311676,0.01249387,0.0002668753,0.00003159299,0.0001701086,0.03952086,0.000383687,0.005844937],"genre_scores_gemma":[0.940976,0.004875916,0.01131007,0.0001960679,0.00002952574,0.0001848871,0.04054361,0.0000790614,0.001804851],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002123742,"threshold_uncertainty_score":0.005328,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004454970887140174,"score_gpt":0.230239198737522,"score_spread":0.2257842278503819,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}