{"id":"W2278601309","doi":"10.1128/genomea.00613-15","title":"Complete Genome Sequence of a Highly Pathogenic Avian Influenza Virus (H5N2) Associated with an Outbreak in Commercial Chickens, Iowa, USA, 2015","year":2015,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute on Aging; U.S. Department of Homeland Security","keywords":"Outbreak; Biology; Influenza A virus subtype H5N1; Virology; Avian influenza virus; Highly pathogenic; Whole genome sequencing; Virus; Genome; Genetics; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001525087,0.0006231293,0.0003646799,0.0009340767,0.0004274672,0.0003941673,0.0002272571,0.000452057,0.002386424],"category_scores_gemma":[0.0003411841,0.000276204,0.0004876084,0.0009483646,0.0001529978,0.0001855705,0.000231693,0.000458212,0.001074379],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00076023,"about_ca_system_score_gemma":0.001143954,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0381217,"about_ca_topic_score_gemma":0.05979686,"domain_scores_codex":[0.999878,0.000009531456,0.00001821885,0.00004553661,0.00003167589,0.00001689107],"domain_scores_gemma":[0.99978,0.0000293322,0.00005337857,0.00001305297,0.00008150157,0.00004266146],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003334411,0.0002636033,0.0841841,0.001547698,0.0003631392,0.004201494,0.001054359,0.001793052,0.8402632,0.0003830481,0.02647635,0.03613572],"study_design_scores_gemma":[0.0001730371,0.0005056694,0.8704107,0.0003676965,0.0004562403,0.002374587,0.001437969,0.001434988,0.02747951,0.0001889733,0.09509795,0.0000726643],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6659885,0.003729111,0.004436299,0.0005658056,0.0005107435,0.0002992057,0.318187,0.0001710771,0.006112209],"genre_scores_gemma":[0.3847347,0.002444443,0.01121368,0.0003786907,0.00008321759,0.0001667605,0.5948826,0.0000817749,0.006014252],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0381217,"threshold_uncertainty_score":0.07579964,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1884249144509512,"score_gpt":0.3819383345538172,"score_spread":0.193513420102866,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}