{"id":"W2278601309","doi":"10.1128/genomea.00613-15","title":"Complete Genome Sequence of a Highly Pathogenic Avian Influenza Virus (H5N2) Associated with an Outbreak in Commercial Chickens, Iowa, USA, 2015","year":2015,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute on Aging; U.S. Department of Homeland Security","keywords":"Outbreak; Biology; Influenza A virus subtype H5N1; Virology; Avian influenza virus; Highly pathogenic; Whole genome sequencing; Virus; Genome; Genetics; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001388283,0.0004719404,0.001019317,0.0004906153,0.0001734722,0.00004507615,0.0005048871,0.0001836035,0.0001039305],"category_scores_gemma":[0.0003359633,0.000411748,0.0001011178,0.000947489,0.000501245,0.0003837165,0.0003326614,0.0005325809,0.0002812521],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001100162,"about_ca_system_score_gemma":0.0008088087,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002687656,"about_ca_topic_score_gemma":0.002959346,"domain_scores_codex":[0.9953934,0.000320954,0.0009143873,0.0006560588,0.001603336,0.001111855],"domain_scores_gemma":[0.9970807,0.00005714978,0.0003919231,0.0008109571,0.001100819,0.0005583977],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003838218,0.001708021,0.6267189,0.0001602189,0.0009406338,0.0005261998,0.007337326,0.000302682,0.3574671,0.00008080473,0.0003229955,0.0005969437],"study_design_scores_gemma":[0.0111007,0.004279312,0.9404439,0.0002262168,0.0001590595,0.00002371672,0.0005996003,0.0001236775,0.0001427456,0.0001190662,0.04214354,0.0006384999],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9915465,0.001091382,0.00001817082,0.0001550064,0.000107471,0.001319431,0.003335765,0.00005386012,0.002372404],"genre_scores_gemma":[0.9947092,0.0001219026,0.0005153195,0.00237061,0.0001525509,0.000125186,0.00137381,0.00007335285,0.000558088],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3573243,"threshold_uncertainty_score":0.9998335,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1884249144509512,"score_gpt":0.3819383345538172,"score_spread":0.193513420102866,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}