{"id":"W2280416398","doi":"10.1128/aem.02017-15","title":"Dehalogenimonas sp. Strain WBC-2 Genome and Identification of Its <i>trans</i> -Dichloroethene Reductive Dehalogenase, TdrA","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Dehalogenase; Dehalococcoides; Operon; Corrinoid; Genome; Biology; Biochemistry; Chemistry; Genetics; Gene; Escherichia coli; Vinyl chloride","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002540509,0.0001985375,0.0002250078,0.00003479534,0.00007374018,0.00001050538,0.0001335636,0.000158916,0.000299343],"category_scores_gemma":[0.000005832424,0.0001826443,0.00003036179,0.00007354213,0.000759472,0.0000768373,0.0001627063,0.00009736876,0.0001247461],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008912163,"about_ca_system_score_gemma":0.000007844922,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002271927,"about_ca_topic_score_gemma":0.00002110794,"domain_scores_codex":[0.9988164,0.00004919746,0.0003484257,0.0004512392,0.00007628195,0.0002584551],"domain_scores_gemma":[0.9995134,0.00001985321,0.0001569122,0.0001531579,0.000002875418,0.0001537967],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005161949,0.00008392064,0.003782848,0.000007532292,0.0000192446,0.000001474534,0.0007155511,0.00001660615,0.9936523,0.00004536364,0.00009403723,0.00152949],"study_design_scores_gemma":[0.001309521,0.0001721133,0.08539916,0.000003898659,0.00005163805,0.0001031265,0.001111765,0.00001420885,0.9024542,0.0003414424,0.008643243,0.0003957115],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977285,0.0004537422,0.00007211485,0.0001254955,0.00006842094,0.0003387674,0.0006967636,0.00001555505,0.0005006109],"genre_scores_gemma":[0.9984593,0.0004983257,0.0002801404,0.0002226966,0.00002414725,0.000008652914,0.0003933363,0.00001453117,0.00009884476],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09119814,"threshold_uncertainty_score":0.7448019,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009879822336764791,"score_gpt":0.1886708090143639,"score_spread":0.1787909866775991,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}