{"id":"W22827969","doi":"10.1186/1742-4690-10-s1-p27","title":"Latent HIV-1 can be reactivated by superinfection in a Tat-dependent manner, which can lead to the emergence of recombinant viruses","year":2013,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre","funders":"","keywords":"Jurkat cells; Superinfection; Virology; Recombinant DNA; Biology; Latent Virus; Virus; Gene; Genetics; T cell; Immune system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000213239,0.0001830625,0.0003188258,0.0001687774,0.0001096695,0.000007803786,0.0002439467,0.0002247321,0.001056169],"category_scores_gemma":[0.0001475734,0.0001258094,0.00005273633,0.0003009035,0.0001293689,0.00004869976,0.0001190061,0.000382291,0.0007019154],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008915811,"about_ca_system_score_gemma":0.00007539822,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03413038,"about_ca_topic_score_gemma":0.01604377,"domain_scores_codex":[0.9981758,0.0004747364,0.0003361182,0.0003598285,0.0000603538,0.0005931584],"domain_scores_gemma":[0.9993038,0.000116075,0.00008305474,0.0003665247,0.0000779198,0.00005264722],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001961487,0.0003509928,0.103902,0.000009129862,0.0001447371,0.000008764106,0.0005691045,0.00002772803,0.8730865,0.00006930732,0.01904309,0.00259253],"study_design_scores_gemma":[0.00416227,0.004981663,0.3458461,0.00003565092,0.00006207655,0.0001648381,0.0008842293,0.00002779264,0.5988607,0.0001037618,0.04439308,0.0004779163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9898818,0.0004339872,0.00001477977,0.008188647,0.0004326342,0.0006488482,0.0001308028,0.00002843427,0.0002401247],"genre_scores_gemma":[0.9973503,0.0003115125,0.000008090838,0.0003113683,0.000009386121,0.0002750633,0.0001993554,0.00001625796,0.001518692],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2742258,"threshold_uncertainty_score":0.999857,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01740355286887969,"score_gpt":0.2520826796390361,"score_spread":0.2346791267701565,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}