{"id":"W2283189806","doi":"10.1371/journal.pone.0149345","title":"Evidence for Host-Genotype Associations of Borrelia burgdorferi Sensu Stricto","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Université de Montréal","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Biology; Borrelia burgdorferi; Phylogenetic tree; Multilocus sequence typing; Genotype; Host adaptation; Host (biology); Borrelia; Sensu; Locus (genetics); Phylogenetics; Genetics; Genetic variation; Zoology; Gene; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001291816,0.0001079796,0.0002573002,0.00007505827,0.00009419762,0.000005107286,0.0001335685,0.0001498652,0.0005011857],"category_scores_gemma":[0.002574747,0.00008448368,0.00009151631,0.0001182412,0.00008616941,0.00009388127,0.00004122188,0.000064756,0.0003651062],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008433658,"about_ca_system_score_gemma":0.0001043056,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001013025,"about_ca_topic_score_gemma":0.00004684159,"domain_scores_codex":[0.9991786,0.00008417048,0.0002381574,0.0002031418,0.00004853023,0.0002473769],"domain_scores_gemma":[0.9980894,0.001108914,0.000171509,0.0002654217,0.0003417127,0.00002308154],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009364155,0.0007515247,0.08642881,0.00003324448,0.0006260406,3.975916e-7,0.00005067437,2.24368e-7,0.9087184,0.0004440823,0.002323997,0.0005289921],"study_design_scores_gemma":[0.001224575,0.0005603883,0.3345635,0.0003584772,0.0005379387,0.000001660673,0.00001672913,0.000001331341,0.6615956,0.0003154009,0.0006204184,0.0002040256],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944642,0.003029472,0.000303086,0.0005944044,0.0001981693,0.0004624006,0.0006399637,0.0001094616,0.0001988636],"genre_scores_gemma":[0.9977995,0.0002559808,0.0001682617,0.00006725272,0.00005385845,0.00006932958,0.00003388289,0.00001722446,0.00153471],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2481347,"threshold_uncertainty_score":0.5487632,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09022992753916806,"score_gpt":0.2808349155136156,"score_spread":0.1906049879744476,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}