{"id":"W2283750877","doi":"10.1111/jpy.12383","title":"Resolving the phylogenetic relationship between <i>Chlamydomonas</i> sp. <scp>UWO</scp> 241 and <i>Chlamydomonas raudensis</i> sag 49.72 (Chlorophyceae) with nuclear and plastid <scp>DNA</scp> sequences","year":2015,"lang":"en","type":"article","venue":"Journal of Phycology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"","keywords":"Phylogenetic tree; Biology; Chlamydomonas; Chlorophyceae; Phylogenetics; Lineage (genetic); Clade; Evolutionary biology; Plastid; Algae; Chlorophyta; Botany; Genetics; Gene; Chloroplast","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001563808,0.000359624,0.0006736242,0.0001344761,0.0007770517,0.00007435313,0.000726316,0.000381392,0.0001147476],"category_scores_gemma":[0.00105134,0.0002561395,0.00009812073,0.0003507618,0.002040279,0.0003578827,0.0006245013,0.00123555,0.00009571265],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001275383,"about_ca_system_score_gemma":0.0001119852,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000132033,"about_ca_topic_score_gemma":0.0007170925,"domain_scores_codex":[0.9968271,0.001131395,0.0006623818,0.0003853377,0.0003286042,0.0006651869],"domain_scores_gemma":[0.9936504,0.00472857,0.0007773972,0.0003804333,0.00009187818,0.000371362],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001170686,0.0001532307,0.8963467,0.00003208098,0.0001873546,0.0001336041,0.004515911,0.001076239,0.05257964,0.0002442827,0.04424177,0.00037205],"study_design_scores_gemma":[0.001796715,0.002198098,0.9331391,0.00005170177,0.000254971,0.001377257,0.002134553,0.00004537699,0.001193177,0.006096989,0.05158347,0.0001285963],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939274,0.0007376108,0.0000348985,0.0006267602,0.0002742189,0.0002708554,0.00001376896,0.00002223103,0.004092257],"genre_scores_gemma":[0.9973305,0.0001649174,0.0009100088,0.0009795247,0.0003085741,0.000005538104,0.00000689279,0.0000386711,0.0002553052],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05138646,"threshold_uncertainty_score":0.9999891,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02310623282766929,"score_gpt":0.2277324609109429,"score_spread":0.2046262280832736,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}