{"id":"W2285368925","doi":"10.1128/jcm.02872-15","title":"Species-Level Identification of Actinomyces Isolates Causing Invasive Infections: Multiyear Comparison of Vitek MS (Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry) to Partial Sequencing of the 16S rRNA Gene","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Actinomycetales infections and treatment","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Calgary Laboratory Services","keywords":"Actinomyces; Biology; Microbiology; 16S ribosomal RNA; Ribosomal RNA; Bacteria; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008031431,0.0001404705,0.0009118036,0.0003106289,0.00005894977,0.000004962693,0.0001131851,0.0001947773,0.0001516124],"category_scores_gemma":[0.001949366,0.00008277898,0.0004137918,0.0004639108,0.0003107983,0.0001092588,0.000053359,0.0002063739,0.000007189201],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001796719,"about_ca_system_score_gemma":0.0003062364,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003348384,"about_ca_topic_score_gemma":0.00001495438,"domain_scores_codex":[0.9967574,0.0003242769,0.002490399,0.0001745023,0.000107152,0.0001462027],"domain_scores_gemma":[0.9941428,0.001176715,0.003489772,0.0002458019,0.0008721593,0.00007276882],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003330388,0.0006168136,0.1801976,0.00004614781,0.0004211101,0.00000207776,0.0001270868,0.0001902209,0.8174216,0.00001473508,0.00003296596,0.0005965853],"study_design_scores_gemma":[0.001769499,0.001226946,0.134111,0.0003433941,0.0004411356,0.0004089378,0.0001127607,0.00004797123,0.8613718,0.00002789993,0.00007113276,0.00006753926],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9817026,0.0001047887,0.01705841,0.0002791964,0.0004521695,0.0002928952,0.0000666668,0.00000510445,0.00003815714],"genre_scores_gemma":[0.9944468,0.0001251196,0.005106662,0.00001414465,0.0001702047,0.000002096155,0.000008864767,0.00001255578,0.0001135149],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04608663,"threshold_uncertainty_score":0.3375629,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07602494890641234,"score_gpt":0.3705102482057294,"score_spread":0.2944852992993171,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}