{"id":"W2286980419","doi":"10.1007/s11306-015-0928-y","title":"Effects of synthetic large-scale genome reduction on metabolism and metabolic preferences in a nutritionally complex environment","year":2015,"lang":"en","type":"article","venue":"Metabolomics","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":19,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Metabolome; Biology; Metabolomics; Biochemistry; Replicon; Metabolism; Genome; Sinorhizobium meliloti; Metabolite; Gene; Bioinformatics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004096636,0.0001721212,0.0003973298,0.00004378858,0.00005325684,0.00002228449,0.00017904,0.00009554212,0.00005519404],"category_scores_gemma":[0.00005416098,0.00008003462,0.00007331975,0.0001943626,0.0000970504,0.0001004404,0.00007920105,0.0001156721,0.00002404143],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002309582,"about_ca_system_score_gemma":0.000009775222,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008477952,"about_ca_topic_score_gemma":0.00003000902,"domain_scores_codex":[0.9986261,0.0002179716,0.0002823929,0.0003406651,0.0002772555,0.0002555819],"domain_scores_gemma":[0.999536,0.0001165464,0.0001245612,0.00007329274,0.00003439578,0.0001152446],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001005281,0.0005894091,0.001824768,0.00001941227,0.00004233201,0.000001543647,0.000431688,0.000008633018,0.9911123,0.002078435,0.00003045261,0.003760495],"study_design_scores_gemma":[0.001093398,0.0002204702,0.7851697,0.00002403229,0.0001378938,0.00001206039,0.0004229224,0.00006432761,0.1962228,0.005624145,0.01069899,0.0003093173],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952838,0.003677686,0.000003646158,0.0003791476,0.00009293808,0.0003434081,0.00007912563,0.0000227844,0.0001175002],"genre_scores_gemma":[0.9980488,0.0004494405,0.001186533,0.00007319015,0.0001099861,0.00005140134,0.00004600393,0.000002084597,0.00003260189],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7948895,"threshold_uncertainty_score":0.3263717,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02021220565751115,"score_gpt":0.2081469045840695,"score_spread":0.1879346989265584,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}