{"id":"W2288413274","doi":"10.1089/biores.2015.0029","title":"Molecular Profiling of Multiplexed Gene Markers to Assess Viability of <i>Ex Vivo</i> Human Colon Explant Cultures","year":2015,"lang":"en","type":"article","venue":"BioResearch open access","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Ex vivo; Explant culture; Biology; Gene expression profiling; Organ culture; Cell culture; Gene expression; Cell biology; In vivo; Tissue culture; Molecular biology; Computational biology; In vitro; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004149938,0.0003782782,0.0003251837,0.0005658484,0.0001866884,0.0005518387,0.0001801427,0.0003178474,0.001304032],"category_scores_gemma":[0.0004057973,0.0001541041,0.0002164487,0.000582532,0.0002336272,0.0002506155,0.0001719273,0.0005179563,0.0006837467],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002251867,"about_ca_system_score_gemma":0.0001734102,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003221308,"about_ca_topic_score_gemma":0.0007596109,"domain_scores_codex":[0.9996514,0.00006331649,0.00003226973,0.0001108138,0.00009528238,0.00004678047],"domain_scores_gemma":[0.9996104,0.0001142565,0.00008866382,0.00004190092,0.0001091383,0.00003573133],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005773977,0.00001904544,0.0004838357,0.00002014568,0.000002487344,0.00001373913,0.00002923521,0.00006074702,0.997852,0.00002821388,0.00003585643,0.00139706],"study_design_scores_gemma":[0.000004187134,0.0002389091,0.006189447,0.000005848617,0.00001568232,0.00006336591,0.00004280084,0.0008711451,0.991457,0.00003495849,0.001070405,0.000006163276],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9112797,0.001824918,0.0785154,0.0001471689,0.00007261128,0.0002636679,0.003899385,0.0005190401,0.003478133],"genre_scores_gemma":[0.8738887,0.003527202,0.1077401,0.0003097149,0.00006476123,0.001105419,0.005729711,0.0002263374,0.007407885],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001304032,"threshold_uncertainty_score":0.004362404,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1825218428931493,"score_gpt":0.4921294427365406,"score_spread":0.3096075998433913,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}