{"id":"W2288413274","doi":"10.1089/biores.2015.0029","title":"Molecular Profiling of Multiplexed Gene Markers to Assess Viability of <i>Ex Vivo</i> Human Colon Explant Cultures","year":2015,"lang":"en","type":"article","venue":"BioResearch open access","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Ex vivo; Explant culture; Biology; Gene expression profiling; Organ culture; Cell culture; Gene expression; Cell biology; In vivo; Tissue culture; Molecular biology; Computational biology; In vitro; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001501686,0.0001708704,0.0003334664,0.00009409287,0.00007895126,0.0001395722,0.001885968,0.0001559484,0.00003234165],"category_scores_gemma":[0.0003748522,0.0001483903,0.00007666828,0.0002811805,0.0001606587,0.00002766439,0.002164294,0.000126233,0.000003911894],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004865747,"about_ca_system_score_gemma":0.000534395,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001731951,"about_ca_topic_score_gemma":0.0002815183,"domain_scores_codex":[0.9979748,0.0003200743,0.0004226086,0.0005061672,0.0003548489,0.0004215163],"domain_scores_gemma":[0.9981918,0.00002144453,0.0001578826,0.0006409925,0.0006427306,0.0003451131],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006782577,0.0002264908,0.0232524,0.0001575511,0.00004558228,0.000005264042,0.00006577142,0.00005798334,0.9706187,0.00006689969,0.004721338,0.0001037085],"study_design_scores_gemma":[0.0009291854,0.0005562122,0.01146472,0.00003287526,0.000008483487,0.000002616515,0.0001667513,0.0000184111,0.9840422,0.00003311633,0.002577043,0.0001683648],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962466,0.0001411052,0.0001795065,0.0001864676,0.000060592,0.001665815,0.0002146242,0.000005943802,0.001299371],"genre_scores_gemma":[0.995707,0.00002870625,0.003592079,0.0001482622,0.00004367507,0.00008230133,0.0002267553,0.00002329913,0.0001478883],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01342346,"threshold_uncertainty_score":0.6051179,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1825218428931493,"score_gpt":0.4921294427365406,"score_spread":0.3096075998433913,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}