{"id":"W2289039523","doi":"10.1139/g10-079","title":"SNP discovery by amplicon sequencing and multiplex SNP genotyping in the allopolyploid species Brassica napusThis article is one of a selection of papers from the conference “Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD crops for sustainable farming”.","year":2010,"lang":"en","type":"article","venue":"Genome","topic":"Nitrogen and Sulfur Effects on Brassica","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Biology; Genetics; Tag SNP; Genome; Molecular Inversion Probe; Single-nucleotide polymorphism; SNP genotyping; Amplicon; SNP; SNP array; Genotyping; Brassica rapa; Genotype; Gene; Polymerase chain reaction","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005632023,0.000165531,0.0002871816,0.00005497647,0.0001109865,0.00005762213,0.0002150414,0.0001427693,0.00001025564],"category_scores_gemma":[0.0004012728,0.0001341917,0.00009910946,0.0001109269,0.0001020999,0.00002508807,0.00007861551,0.0001403772,1.134926e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008957604,"about_ca_system_score_gemma":0.0001599486,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005298423,"about_ca_topic_score_gemma":0.0009134797,"domain_scores_codex":[0.9986092,0.00006423947,0.0004639206,0.0003331143,0.0001607376,0.000368746],"domain_scores_gemma":[0.9988618,0.0003270863,0.0003647945,0.0002360161,0.0001747756,0.00003548789],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001747622,0.00009296035,0.01084914,0.0001138626,0.00007941302,2.476983e-7,0.001881366,0.000189557,0.9861004,0.00009362605,0.00001522686,0.0004094129],"study_design_scores_gemma":[0.00161982,0.0003304211,0.03617395,0.00002266549,0.0000653127,6.371778e-7,0.003351518,0.007070473,0.9502841,0.0005951363,0.000284561,0.0002013639],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9905062,0.0002611306,0.00745135,0.0004885974,0.00001846641,0.001069167,0.0001750143,0.000003954979,0.00002614586],"genre_scores_gemma":[0.9967707,0.00005392711,0.002350045,0.0003291025,0.0000559759,0.0002010168,0.00006481904,0.00002313169,0.0001512371],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03581629,"threshold_uncertainty_score":0.5472177,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01377142103775353,"score_gpt":0.2307588589366132,"score_spread":0.2169874378988596,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}