{"id":"W2289039523","doi":"10.1139/g10-079","title":"SNP discovery by amplicon sequencing and multiplex SNP genotyping in the allopolyploid species Brassica napusThis article is one of a selection of papers from the conference “Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD crops for sustainable farming”.","year":2010,"lang":"en","type":"article","venue":"Genome","topic":"Nitrogen and Sulfur Effects on Brassica","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Biology; Genetics; Tag SNP; Genome; Molecular Inversion Probe; Single-nucleotide polymorphism; SNP genotyping; Amplicon; SNP; SNP array; Genotyping; Brassica rapa; Genotype; Gene; Polymerase chain reaction","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007476464,0.000533888,0.00041246,0.001257322,0.0003032552,0.0005377106,0.0003620112,0.0008072551,0.0007048573],"category_scores_gemma":[0.001390208,0.0004379431,0.0007142656,0.0007039875,0.0002660453,0.0002787627,0.0004697301,0.000606909,0.0004778384],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003520962,"about_ca_system_score_gemma":0.0002456459,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001393155,"about_ca_topic_score_gemma":0.004837474,"domain_scores_codex":[0.9988039,0.0001154624,0.0000723777,0.0006870264,0.000257173,0.00006407162],"domain_scores_gemma":[0.9991974,0.0002536522,0.0002533171,0.0001241315,0.0001081474,0.00006327572],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000200609,0.00004942419,0.008064258,0.000124613,0.0001235099,0.0001566056,0.0001869559,0.001057977,0.957639,0.0003530864,0.0003431124,0.03170089],"study_design_scores_gemma":[0.00008899883,0.0009097902,0.2196483,0.0000783369,0.0005333988,0.002192683,0.0001991489,0.04654084,0.7019914,0.001720007,0.02596161,0.0001354832],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8289089,0.002794079,0.155755,0.000274178,0.0001185232,0.0002713246,0.008212554,0.00137303,0.002292442],"genre_scores_gemma":[0.7251084,0.001418687,0.2569588,0.0004591912,0.00006505068,0.0003443269,0.009655423,0.0002381546,0.005751844],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001393155,"threshold_uncertainty_score":0.003953993,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01377142103775353,"score_gpt":0.2307588589366132,"score_spread":0.2169874378988596,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}