{"id":"W2289383664","doi":"10.1017/pao.2015.7","title":"Molecular phylogenetic analyses of tissue coccidia (sarcocystidae; apicomplexa) based on nuclear 18s RDNA and mitochondrial COI sequences confirms the paraphyly of the genus Hammondia","year":2016,"lang":"en","type":"article","venue":"Parasitology Open","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":46,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Ontario Ministry of Agriculture, Food and Rural Affairs; Natural Sciences and Engineering Research Council of Canada; Pfizer; Ontario Veterinary College, University of Guelph; Ministry of Agriculture, Food and Rural Affairs; U.S. Department of Agriculture","keywords":"Biology; Paraphyly; Monophyly; Neospora caninum; Clade; Phylogenetic tree; Zoology; Toxoplasma gondii; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002201609,0.0002165312,0.0001376939,0.000561422,0.0004327544,0.0003497712,0.0001589765,0.0001353538,0.00145006],"category_scores_gemma":[0.0004204265,0.00007810552,0.0001507053,0.0003127723,0.0001672322,0.0001421784,0.0002163558,0.0001998162,0.000282512],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004176405,"about_ca_system_score_gemma":0.0003006089,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005035645,"about_ca_topic_score_gemma":0.008937637,"domain_scores_codex":[0.9998809,0.0000236037,0.00001075314,0.00003634413,0.00002250649,0.00002584288],"domain_scores_gemma":[0.9997708,0.00003897485,0.00007108459,0.00001444405,0.00005409347,0.00005059517],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000601964,0.00008737655,0.4985294,0.0001663266,0.00009926435,0.0005051397,0.001414272,0.0005766179,0.4609152,0.0007091794,0.000421164,0.03597401],"study_design_scores_gemma":[0.00001844667,0.0002111611,0.9773108,0.00005063987,0.00005627234,0.0005240417,0.001013619,0.003564207,0.009829232,0.0001736581,0.007234956,0.0000130253],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972346,0.0001769404,0.0009100833,0.00002623145,0.00000469291,0.0000170733,0.0002689951,0.000009912131,0.001351519],"genre_scores_gemma":[0.9967611,0.0001085626,0.001896107,0.00002131939,0.000003486248,0.00001279399,0.0006468343,0.000004963678,0.0005448216],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005035645,"threshold_uncertainty_score":0.01001263,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03726848275391079,"score_gpt":0.3506900419824736,"score_spread":0.3134215592285628,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}