{"id":"W2290100795","doi":"10.1186/s12864-016-2400-4","title":"Comprehensive identification of sexually dimorphic genes in diverse cattle tissues using RNA-seq","year":2016,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"Biotechnology Research Institute","funders":"Rural Development Administration","keywords":"Sexual dimorphism; Biology; Gene; Gene expression; RNA-Seq; Genetics; RNA; Gene expression profiling; DNA microarray; Computational biology; Evolutionary biology; Transcriptome; Zoology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007860094,0.00008741237,0.0001014061,0.00006142515,0.00003271817,0.00000852446,0.0001458679,0.00008614337,0.00001414895],"category_scores_gemma":[0.00002195084,0.0000740678,0.00003721059,0.00006606047,0.00006536088,0.000004913483,0.00007693053,0.00002144243,0.00001059142],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003755529,"about_ca_system_score_gemma":0.0001011833,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003947163,"about_ca_topic_score_gemma":0.00006878214,"domain_scores_codex":[0.9992687,0.0000491422,0.0002508957,0.0002419158,0.00007544045,0.0001139748],"domain_scores_gemma":[0.9993916,0.000009726743,0.000162147,0.0003089423,0.00009336985,0.00003425369],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004039989,0.00002666562,0.00871184,0.00001842884,0.000007442574,1.865684e-7,0.00007204269,0.0004959449,0.9862393,0.00002989303,0.000153747,0.004204169],"study_design_scores_gemma":[0.0004331094,0.00003111192,0.021952,0.00001385794,0.000008750262,0.000001985114,0.0003490533,0.0001255363,0.9689915,0.00007101018,0.007904852,0.0001172806],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.988278,0.0008209479,0.01047833,0.00004977362,0.0001757101,0.0001255303,0.00002574361,0.000004697216,0.00004128583],"genre_scores_gemma":[0.9976555,0.0004487999,0.0011849,0.00002450083,0.00009134081,0.00000911,0.00002903995,0.00001376644,0.0005430273],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01724779,"threshold_uncertainty_score":0.3020397,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05014586263601194,"score_gpt":0.2948326931250763,"score_spread":0.2446868304890644,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}