{"id":"W2290969064","doi":"10.1155/2016/4210129","title":"Review of 16S and ITS Direct Sequencing Results for Clinical Specimens Submitted to a Reference Laboratory","year":2016,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control; University of British Columbia Hospital","funders":"British Columbia Centre for Disease Control","keywords":"16S ribosomal RNA; Microscopy; Biology; Stain; Microbiology; Internal transcribed spacer; Bacteria; Staining; Pathology; Ribosomal RNA; Medicine; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009874227,0.0006251527,0.0009659579,0.01409474,0.0007737472,0.001419902,0.001765869,0.0008080498,0.001327501],"category_scores_gemma":[0.03253238,0.0005398206,0.0006116594,0.004813113,0.001126246,0.001150144,0.0005742958,0.0004357502,0.001354342],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001404569,"about_ca_system_score_gemma":0.002988179,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007139232,"about_ca_topic_score_gemma":0.0103985,"domain_scores_codex":[0.9918945,0.001367926,0.002360073,0.0005602304,0.003519104,0.0002979845],"domain_scores_gemma":[0.948308,0.01234731,0.006431486,0.001759842,0.02977842,0.001374966],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.00108659,0.0001735928,0.3387624,0.01870225,0.0004575914,0.03964364,0.003817888,0.0008139125,0.07845544,0.000472397,0.02565858,0.4919558],"study_design_scores_gemma":[0.00006122344,0.001335798,0.7134003,0.006953587,0.0007430735,0.08497674,0.004619398,0.0007922833,0.03573698,0.0002295689,0.1509864,0.0001646112],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5987868,0.3602145,0.007715067,0.005377291,0.003751447,0.0005837648,0.00430565,0.00062028,0.0186453],"genre_scores_gemma":[0.818633,0.1519396,0.01506303,0.002508104,0.001616411,0.0001962476,0.006600383,0.000211833,0.003231322],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01409474,"threshold_uncertainty_score":0.05222052,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03796920960175281,"score_gpt":0.3431965737389576,"score_spread":0.3052273641372048,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}