{"id":"W2291349339","doi":"10.1101/mcs.a000679","title":"Molecular etiology of an indolent lymphoproliferative disorder determined by whole-genome sequencing","year":2016,"lang":"en","type":"article","venue":"Molecular Case Studies","topic":"Chronic Lymphocytic Leukemia Research","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Terry Fox Research Institute; BC Cancer Agency; Canada's Michael Smith Genome Sciences Centre","funders":"Terry Fox Foundation; Michael Smith Health Research BC","keywords":"Chronic lymphocytic leukemia; Genome; Lymphoproliferative disorders; Biology; DNA sequencing; Transcriptome; Lymphoma; Gene expression profiling; Whole genome sequencing; Gene; Digital polymerase chain reaction; Genetics; Cancer genome sequencing; Leukemia; Computational biology; Gene expression; Polymerase chain reaction; Immunology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001530086,0.0002304599,0.0001923371,0.0006829164,0.0002770463,0.0003430205,0.0001636745,0.0002969143,0.0007490894],"category_scores_gemma":[0.0004889379,0.00007925971,0.0001391113,0.0004406252,0.0001973253,0.000143765,0.0001653447,0.0002475747,0.000108862],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002170381,"about_ca_system_score_gemma":0.0001537417,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009100292,"about_ca_topic_score_gemma":0.001644184,"domain_scores_codex":[0.9999106,0.00001356763,0.000006846186,0.00002740463,0.00002211688,0.0000194736],"domain_scores_gemma":[0.9998504,0.00006494402,0.00003422733,0.00001188904,0.00001851902,0.00002009948],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"case_report","study_design_scores_codex":[0.0005314529,0.00008819921,0.502044,0.0001323833,0.0001381089,0.06455141,0.0005610292,0.001946724,0.3893889,0.001634251,0.0007904841,0.0381931],"study_design_scores_gemma":[0.00005997153,0.0003571788,0.7526321,0.0001073842,0.0004589842,0.1530456,0.001120333,0.01525967,0.06336922,0.003031736,0.01051453,0.00004329956],"study_design_candidate":"case_report","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960187,0.0006847029,0.001769454,0.0001960889,0.000004776983,0.00001559692,0.0003079473,0.00002934604,0.0009734178],"genre_scores_gemma":[0.9983113,0.0002290657,0.001144128,0.00005155152,0.000006232718,0.000004026906,0.0001507333,0.000005622587,0.00009746265],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009100292,"threshold_uncertainty_score":0.002505898,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02502612341013688,"score_gpt":0.3293395031984806,"score_spread":0.3043133797883437,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}