{"id":"W2291519142","doi":"10.1371/journal.pone.0149520","title":"Comparative Genomic Analysis of Mannheimia haemolytica from Bovine Sources","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":58,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; University of Lethbridge; University of Saskatchewan; Agriculture and Agri-Food Canada","funders":"","keywords":"Prophage; Biology; Microbiology; Comparative genomics; Virulence; Serotype; Genome; Genetics; Antibiotic resistance; Gene; Virology; Genomics; Bacteriophage; Antibiotics; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001830963,0.0003382666,0.0003411643,0.001294531,0.0002727019,0.0004578664,0.0002277565,0.0003237089,0.0009507984],"category_scores_gemma":[0.0005058742,0.0001788359,0.0005727207,0.001222439,0.0001466862,0.0001459414,0.0003885366,0.0004167552,0.0004920433],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003270725,"about_ca_system_score_gemma":0.0002722981,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003221442,"about_ca_topic_score_gemma":0.003878078,"domain_scores_codex":[0.9997663,0.00002417298,0.00001763837,0.00007143098,0.00006659503,0.00005387463],"domain_scores_gemma":[0.9996692,0.00008049744,0.0001051051,0.00001912813,0.00007438649,0.00005166877],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002606667,0.00004018057,0.003999131,0.0002109556,0.00002971397,0.0001931757,0.0002367449,0.00009967205,0.9883334,0.00007543247,0.0001000586,0.006420994],"study_design_scores_gemma":[0.00004414029,0.001349948,0.7681755,0.0001579817,0.0003467806,0.003214316,0.0009607848,0.001701653,0.1993664,0.0002142293,0.02441953,0.000048728],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9792567,0.003341216,0.004157645,0.0001376984,0.00003052514,0.00007599087,0.009969812,0.00006765488,0.002962736],"genre_scores_gemma":[0.9455546,0.002241443,0.01117286,0.0002218192,0.00002656157,0.00008123135,0.03778209,0.00006421377,0.00285518],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003221442,"threshold_uncertainty_score":0.006405413,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0684653529207641,"score_gpt":0.2773113860602057,"score_spread":0.2088460331394416,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}