{"id":"W2293514607","doi":"10.1128/genomea.00094-16","title":"Complete Genome Sequence of <i>Nitrosomonas ureae</i> Strain Nm10, an Oligotrophic Group 6a Nitrosomonad","year":2016,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Alberta Innovates; Alberta Innovates - Technology Futures; Natural Sciences and Engineering Research Council of Canada; Universität Hamburg; Government of Canada","keywords":"Strain (injury); Biology; Genome; Whole genome sequencing; Nitrosomonas; Mediterranean climate; Mesophile; Genetics; Ecology; Gene; Bacteria; Nitrate","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002928663,0.0004427277,0.0004228171,0.00009478257,0.0002300034,0.00004673269,0.0007807859,0.0001115995,0.002173741],"category_scores_gemma":[0.000006970512,0.000323412,0.0001552852,0.0003471546,0.00052225,0.0006723217,0.0003372692,0.0001060087,0.001372734],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003921691,"about_ca_system_score_gemma":0.00002775493,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003599382,"about_ca_topic_score_gemma":0.00008655147,"domain_scores_codex":[0.9967884,0.0001323622,0.0005779043,0.0007853087,0.0008387262,0.0008772495],"domain_scores_gemma":[0.9985928,0.00002574514,0.0002607549,0.0007593386,0.00003496252,0.0003264312],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001054616,0.0003210421,0.01113919,0.00001141346,0.00008057958,0.00005505948,0.0002345101,0.00004426664,0.9863756,0.00009625111,0.00004237871,0.001494258],"study_design_scores_gemma":[0.02474467,0.01238837,0.3582959,0.0003112198,0.0008376782,0.0005486093,0.0008724618,0.0003591657,0.06625121,0.02902398,0.4993662,0.007000533],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929298,0.0001302591,0.0003981818,0.0001590532,0.00017533,0.0005397139,0.003566275,0.00007643949,0.002024926],"genre_scores_gemma":[0.9928007,0.0001216269,0.003891813,0.0002898813,0.0001280795,0.00005290317,0.0009084425,0.00005444512,0.001752077],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9201244,"threshold_uncertainty_score":0.9999218,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03111476088580954,"score_gpt":0.2374434376117802,"score_spread":0.2063286767259707,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}