{"id":"W2293900604","doi":"10.1158/1557-3125.advbc-pr07","title":"Abstract PR07: Integrative functional genomics of breast cancer","year":2013,"lang":"en","type":"article","venue":"Molecular Cancer Research","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"Synthetic lethality; Biology; CDKN2A; Copy-number variation; Gene; PTEN; Cancer; Cancer research; CDKN2B; Small hairpin RNA; Breast cancer; Genetics; Somatic cell; Palbociclib; Computational biology; Genome; Gene knockdown; Metastatic breast cancer; PI3K/AKT/mTOR pathway; Signal transduction","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008647401,0.001016306,0.0007548422,0.0009539225,0.0004329849,0.0008036175,0.001368902,0.0005899596,0.01070533],"category_scores_gemma":[0.0002962951,0.0004834908,0.0007288029,0.0008886906,0.000307636,0.0002865212,0.001023572,0.00145269,0.005164437],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006249445,"about_ca_system_score_gemma":0.000688823,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00156495,"about_ca_topic_score_gemma":0.001897964,"domain_scores_codex":[0.9995371,0.00008776863,0.00002082366,0.00009302769,0.0001876145,0.00007363617],"domain_scores_gemma":[0.9998645,0.00003249584,0.00002217973,0.00002297278,0.00001929443,0.00003860898],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005559004,0.0002478033,0.0008934239,0.0005207853,0.00009105132,0.0002663531,0.0001113977,0.003487281,0.8739852,0.0149274,0.03154617,0.07336716],"study_design_scores_gemma":[0.0006900645,0.001549924,0.01333917,0.0001848047,0.0002823916,0.001939907,0.0001127738,0.05534407,0.4677282,0.009099579,0.4495896,0.0001394814],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"other","genre_scores_codex":[0.2178508,0.008409357,0.5086568,0.002781473,0.001277284,0.002214371,0.08592459,0.05884977,0.1140357],"genre_scores_gemma":[0.4103535,0.00620212,0.375301,0.001078957,0.0002410436,0.001892762,0.1491168,0.007453548,0.04836024],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.01070533,"threshold_uncertainty_score":0.03581285,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02784823323185618,"score_gpt":0.3337837203843147,"score_spread":0.3059354871524585,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}